Variant report

Variant	rs1884185
Chromosome Location	chr6:99426211-99426212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10484609	0.83[CEU][hapmap]
rs12110701	0.81[CEU][hapmap]
rs12110702	0.83[CEU][hapmap]
rs12173555	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1474606	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1997936	0.84[ASN][1000 genomes]
rs2016597	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2180048	0.82[ASN][1000 genomes]
rs2300062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2300063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2388750	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2572095	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2572099	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2572105	0.84[ASN][1000 genomes]
rs2572109	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2572116	0.81[ASN][1000 genomes]
rs2572136	0.83[ASN][1000 genomes]
rs2747731	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2747733	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2747734	0.84[ASN][1000 genomes]
rs2747736	0.87[ASN][1000 genomes]
rs2747738	0.86[ASN][1000 genomes]
rs28488166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3756986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3823035	0.83[CEU][hapmap]
rs55923681	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67597785	0.81[AFR][1000 genomes]
rs6924301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6928645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73503620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73505759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7450561	0.85[AMR][1000 genomes]
rs7742800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321243	0.83[CEU][hapmap]
rs9372960	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9372961	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372982	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9372983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9375721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9375728	1.00[CEU][hapmap]
rs9375729	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs9375730	0.83[CEU][hapmap]
rs9375733	0.83[CEU][hapmap]
rs9375807	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs9385544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9388785	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9388809	0.81[CEU][hapmap]
rs9388814	0.83[CEU][hapmap]
rs9388895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9388899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388909	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402235	0.83[CEU][hapmap]
rs9402255	0.83[CEU][hapmap]
rs9402350	0.87[ASN][1000 genomes]
rs9402371	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99421600-99426800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:99422200-99427000	Weak transcription	Psoas Muscle	Psoas
3	chr6:99424000-99426600	Enhancers	Brain Anterior Caudate	brain
4	chr6:99424000-99426800	Enhancers	Fetal Brain Male	brain
5	chr6:99424200-99427400	Weak transcription	Left Ventricle	heart
6	chr6:99424600-99426800	Enhancers	Brain Substantia Nigra	brain
7	chr6:99424600-99427000	Enhancers	Fetal Brain Female	brain
8	chr6:99424800-99427600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:99425200-99428800	Weak transcription	Fetal Lung	lung
10	chr6:99425800-99426400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:99425800-99427600	Enhancers	Liver	Liver
12	chr6:99425800-99428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:99425800-99428400	Weak transcription	Right Atrium	heart
14	chr6:99426000-99426600	Weak transcription	Brain Germinal Matrix	brain
15	chr6:99426200-99426400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:99426200-99426400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:99426200-99426400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:99426200-99426600	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:99426200-99427400	Active TSS	Aorta	Aorta
20	chr6:99426200-99428800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:99426200-99431200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:99426200-99434000	Weak transcription	Fetal Heart	heart

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