Variant report

Variant	rs2572099
Chromosome Location	chr6:99435808-99435809
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10484609	0.83[CEU][hapmap]
rs12110701	0.83[CEU][hapmap]
rs12110702	0.84[CEU][hapmap]
rs12173555	0.88[ASN][1000 genomes]
rs1474606	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1884185	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1997936	0.87[ASN][1000 genomes]
rs2016597	0.89[AMR][1000 genomes]
rs2180048	0.85[ASN][1000 genomes]
rs2300062	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2300063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2388750	0.89[AMR][1000 genomes]
rs2572095	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2572105	0.87[ASN][1000 genomes]
rs2572109	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572116	0.83[ASN][1000 genomes]
rs2572136	0.85[ASN][1000 genomes]
rs2747731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747734	0.87[ASN][1000 genomes]
rs2747736	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2747738	0.89[ASN][1000 genomes]
rs28488166	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3756986	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3823035	0.83[CEU][hapmap]
rs55923681	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6924301	0.89[AMR][1000 genomes]
rs6928645	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73503620	0.89[AMR][1000 genomes]
rs73505759	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321243	0.83[CEU][hapmap]
rs9372960	0.84[AMR][1000 genomes]
rs9372961	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9372983	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9375721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9375728	1.00[CEU][hapmap]
rs9375729	1.00[CEU][hapmap]
rs9375730	0.84[CEU][hapmap]
rs9375733	0.84[CEU][hapmap]
rs9375807	1.00[CEU][hapmap]
rs9385544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9388809	0.83[CEU][hapmap]
rs9388814	0.84[CEU][hapmap]
rs9388895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9388899	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402235	0.84[CEU][hapmap]
rs9402255	0.83[CEU][hapmap]
rs9402350	0.90[ASN][1000 genomes]
rs9402371	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99433000-99436200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:99434400-99436200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:99434800-99440000	Weak transcription	Fetal Heart	heart

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