Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12173555	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1884185	0.87[ASN][1000 genomes]
rs2180048	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300062	0.80[ASN][1000 genomes]
rs2300063	0.80[ASN][1000 genomes]
rs2572095	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572099	0.90[ASN][1000 genomes]
rs2572109	0.90[ASN][1000 genomes]
rs2572116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2747731	0.90[ASN][1000 genomes]
rs2747733	0.90[ASN][1000 genomes]
rs2747736	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747738	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28488166	0.86[ASN][1000 genomes]
rs3756986	0.80[ASN][1000 genomes]
rs55923681	0.86[ASN][1000 genomes]
rs73505759	0.84[ASN][1000 genomes]
rs7742800	0.80[ASN][1000 genomes]
rs9388899	0.86[ASN][1000 genomes]
rs9388909	0.88[ASN][1000 genomes]
rs9402371	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99460000-99461200	Enhancers	NHLF	lung
2	chr6:99460400-99461200	Enhancers	NH-A	brain
3	chr6:99460400-99462200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:99460400-99462400	Enhancers	NHDF-Ad	bronchial
5	chr6:99460400-99462400	Enhancers	Osteobl	bone
6	chr6:99460800-99461800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:99460800-99461800	Enhancers	HMEC	breast
8	chr6:99460800-99462200	Enhancers	HSMM	muscle

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