Variant report

Variant	rs9372983
Chromosome Location	chr6:99360105-99360106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12173555	0.83[AMR][1000 genomes]
rs1474606	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2016597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2300062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2300063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2388750	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2572095	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2572099	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2572109	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2747731	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2747733	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28488166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35727107	0.83[ASN][1000 genomes]
rs3756986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55923681	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67597785	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6924301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73503620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7450561	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7742800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372960	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372961	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9372982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375807	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9385544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388785	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9388899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9388909	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1031376	chr6:99337783-99394171	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538386	chr6:99337783-99394171	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99297000-99386000	Weak transcription	Fetal Brain Male	brain
2	chr6:99304600-99387200	Weak transcription	A549	lung
3	chr6:99309600-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:99309800-99377400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:99312000-99370800	Weak transcription	Esophagus	oesophagus
6	chr6:99312600-99372600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:99319400-99393600	Weak transcription	NHLF	lung
8	chr6:99320200-99379400	Weak transcription	NHEK	skin
9	chr6:99320400-99393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:99321000-99369000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:99322400-99373200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:99326000-99380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:99328800-99384800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:99334200-99360800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:99335000-99376000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:99337400-99373600	Weak transcription	K562	blood
17	chr6:99345400-99381200	Weak transcription	Right Ventricle	heart
18	chr6:99347000-99376000	Weak transcription	Gastric	stomach
19	chr6:99347200-99374200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:99347200-99377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:99347400-99373200	Weak transcription	Ovary	ovary
22	chr6:99347400-99373800	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:99347400-99374400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:99347600-99392800	Weak transcription	Hela-S3	cervix
25	chr6:99348000-99377400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:99348200-99360200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:99349400-99367200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:99349400-99384400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:99349400-99392600	Weak transcription	Pancreas	Pancrea
30	chr6:99349600-99374400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:99349600-99380200	Weak transcription	Brain Substantia Nigra	brain
32	chr6:99349800-99374200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:99349800-99380400	Weak transcription	Fetal Lung	lung
34	chr6:99350600-99385600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:99351000-99374400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:99352200-99375200	Weak transcription	Fetal Kidney	kidney
37	chr6:99352600-99364800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:99353000-99380200	Weak transcription	HUVEC	blood vessel
39	chr6:99353400-99387200	Weak transcription	HMEC	breast
40	chr6:99353600-99369000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:99353600-99373400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:99353600-99373600	Weak transcription	Fetal Thymus	thymus
43	chr6:99353600-99374400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:99353600-99374400	Weak transcription	HSMM	muscle
45	chr6:99353600-99377400	Weak transcription	Psoas Muscle	Psoas
46	chr6:99353600-99377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:99353600-99382400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:99353800-99373400	Weak transcription	Adipose Nuclei	Adipose
49	chr6:99353800-99373400	Weak transcription	NHDF-Ad	bronchial
50	chr6:99354000-99364800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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