Variant report

Variant	rs35727107
Chromosome Location	chr6:99301012-99301013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10484609	0.86[EUR][1000 genomes]
rs12110362	0.89[EUR][1000 genomes]
rs12110701	0.86[EUR][1000 genomes]
rs12110702	0.86[EUR][1000 genomes]
rs13194064	0.89[EUR][1000 genomes]
rs13200668	0.88[EUR][1000 genomes]
rs13217727	0.89[EUR][1000 genomes]
rs1474606	0.83[ASN][1000 genomes]
rs195842	0.82[EUR][1000 genomes]
rs2016597	0.90[ASN][1000 genomes]
rs2267924	0.86[EUR][1000 genomes]
rs2281123	0.89[EUR][1000 genomes]
rs2300060	0.83[EUR][1000 genomes]
rs2388750	0.90[ASN][1000 genomes]
rs3765239	0.89[EUR][1000 genomes]
rs3811071	0.89[EUR][1000 genomes]
rs3823035	0.86[EUR][1000 genomes]
rs4407721	0.89[EUR][1000 genomes]
rs6924301	0.90[ASN][1000 genomes]
rs6928645	0.87[ASN][1000 genomes]
rs6929427	0.89[EUR][1000 genomes]
rs73503620	0.90[ASN][1000 genomes]
rs760765	0.89[EUR][1000 genomes]
rs760766	0.89[EUR][1000 genomes]
rs9321243	0.86[EUR][1000 genomes]
rs9372960	0.87[ASN][1000 genomes]
rs9372982	0.81[ASN][1000 genomes]
rs9372983	0.83[ASN][1000 genomes]
rs9375713	0.89[EUR][1000 genomes]
rs9375721	0.87[ASN][1000 genomes]
rs9375728	0.89[EUR][1000 genomes]
rs9375730	0.89[EUR][1000 genomes]
rs9375733	0.89[EUR][1000 genomes]
rs9375750	0.87[EUR][1000 genomes]
rs9385541	0.89[EUR][1000 genomes]
rs9385544	0.87[ASN][1000 genomes]
rs9388785	0.88[ASN][1000 genomes]
rs9388788	0.89[EUR][1000 genomes]
rs9388809	0.89[EUR][1000 genomes]
rs9388815	0.86[EUR][1000 genomes]
rs9402227	0.89[EUR][1000 genomes]
rs9402228	0.88[EUR][1000 genomes]
rs9402235	0.89[EUR][1000 genomes]
rs9402255	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv823787	chr6:99270549-99302534	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3692909	chr6:99274066-99309057	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35727107	FBXL4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99294600-99347800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:99297000-99386000	Weak transcription	Fetal Brain Male	brain
3	chr6:99297400-99304600	Weak transcription	Brain Germinal Matrix	brain
4	chr6:99298200-99333200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:99298600-99345400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:99300000-99313800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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