Variant report
Variant | rs67597785 |
---|---|
Chromosome Location | chr6:99399037-99399038 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000112234 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10484609 | 0.92[ASN][1000 genomes] |
rs12110362 | 0.92[ASN][1000 genomes] |
rs12110701 | 0.92[ASN][1000 genomes] |
rs12110702 | 0.92[ASN][1000 genomes] |
rs13194064 | 0.92[ASN][1000 genomes] |
rs13217727 | 0.92[ASN][1000 genomes] |
rs1884185 | 0.81[AFR][1000 genomes] |
rs195842 | 0.96[ASN][1000 genomes] |
rs2016597 | 0.81[AFR][1000 genomes] |
rs2124137 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2267924 | 0.92[ASN][1000 genomes] |
rs2281123 | 0.92[ASN][1000 genomes] |
rs2300060 | 0.92[ASN][1000 genomes] |
rs2300062 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs2300063 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs28488166 | 0.81[AFR][1000 genomes] |
rs3756986 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs3765239 | 0.92[ASN][1000 genomes] |
rs3811071 | 0.90[ASN][1000 genomes] |
rs3823035 | 0.92[ASN][1000 genomes] |
rs4407721 | 0.89[ASN][1000 genomes] |
rs6921694 | 0.88[ASN][1000 genomes] |
rs6924301 | 0.81[AFR][1000 genomes] |
rs6928645 | 0.84[AFR][1000 genomes] |
rs6929427 | 0.92[ASN][1000 genomes] |
rs73505759 | 0.84[AFR][1000 genomes] |
rs760765 | 0.89[ASN][1000 genomes] |
rs760766 | 0.89[ASN][1000 genomes] |
rs7742800 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs7759571 | 0.80[ASN][1000 genomes] |
rs9321243 | 0.92[ASN][1000 genomes] |
rs9372960 | 0.81[AFR][1000 genomes] |
rs9372982 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs9372983 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs9375713 | 0.92[ASN][1000 genomes] |
rs9375721 | 0.84[AFR][1000 genomes] |
rs9375728 | 0.92[ASN][1000 genomes] |
rs9375729 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9375730 | 0.92[ASN][1000 genomes] |
rs9375733 | 0.92[ASN][1000 genomes] |
rs9375750 | 0.90[ASN][1000 genomes] |
rs9375807 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9385541 | 0.90[ASN][1000 genomes] |
rs9385544 | 0.84[AFR][1000 genomes] |
rs9388788 | 0.92[ASN][1000 genomes] |
rs9388789 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9388809 | 0.91[ASN][1000 genomes] |
rs9388815 | 0.92[ASN][1000 genomes] |
rs9388899 | 0.84[AFR][1000 genomes] |
rs9402227 | 0.90[ASN][1000 genomes] |
rs9402228 | 0.92[ASN][1000 genomes] |
rs9402235 | 0.92[ASN][1000 genomes] |
rs9402255 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv604253 | chr6:98857397-99630038 | Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
No data |