Variant report

Variant	rs199996
Chromosome Location	chr5:8702492-8702493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10040826	1.00[ASN][1000 genomes]
rs10060970	1.00[ASN][1000 genomes]
rs10062575	1.00[ASN][1000 genomes]
rs10064896	1.00[ASN][1000 genomes]
rs10066543	1.00[ASN][1000 genomes]
rs10071702	1.00[ASN][1000 genomes]
rs10214050	1.00[ASN][1000 genomes]
rs12187730	1.00[ASN][1000 genomes]
rs12517114	1.00[ASN][1000 genomes]
rs13355566	1.00[ASN][1000 genomes]
rs13357083	1.00[ASN][1000 genomes]
rs13361593	1.00[ASN][1000 genomes]
rs1392958	1.00[ASN][1000 genomes]
rs1501346	1.00[ASN][1000 genomes]
rs16881001	1.00[ASN][1000 genomes]
rs16881003	1.00[ASN][1000 genomes]
rs17221177	1.00[ASN][1000 genomes]
rs17222920	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199189	1.00[ASN][1000 genomes]
rs200007	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200016	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388359	1.00[ASN][1000 genomes]
rs2388360	1.00[ASN][1000 genomes]
rs2388361	1.00[ASN][1000 genomes]
rs2388362	1.00[ASN][1000 genomes]
rs2388363	1.00[ASN][1000 genomes]
rs2388364	1.00[ASN][1000 genomes]
rs4404653	1.00[ASN][1000 genomes]
rs60571534	1.00[ASN][1000 genomes]
rs62355864	1.00[ASN][1000 genomes]
rs62357917	1.00[ASN][1000 genomes]
rs6859923	1.00[ASN][1000 genomes]
rs6859933	1.00[ASN][1000 genomes]
rs722201	1.00[ASN][1000 genomes]
rs722202	1.00[ASN][1000 genomes]
rs722203	1.00[ASN][1000 genomes]
rs736970	1.00[ASN][1000 genomes]
rs73738746	1.00[ASN][1000 genomes]
rs7703856	1.00[ASN][1000 genomes]
rs7707778	1.00[ASN][1000 genomes]
rs7715870	1.00[ASN][1000 genomes]
rs7726627	1.00[ASN][1000 genomes]
rs7728052	1.00[ASN][1000 genomes]
rs7732493	1.00[ASN][1000 genomes]
rs7732609	1.00[ASN][1000 genomes]
rs7737474	1.00[ASN][1000 genomes]
rs9313248	1.00[ASN][1000 genomes]
rs9313250	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032346	chr5:8522331-8747061	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537636	chr5:8522331-8747061	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537637	chr5:8690735-8730509	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv881428	chr5:8697444-8715139	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv881307	chr5:8697444-8718172	Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1016033	chr5:8699765-8747142	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv436977	chr5:8699765-8749282	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv461931	chr5:8700487-8770185	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv597030	chr5:8700487-8770185	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv10663	chr5:8700828-8749424	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv597031	chr5:8701366-8747106	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv2763864	chr5:8701366-8749776	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv597032	chr5:8701920-8747106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	esv1801860	chr5:8701920-8747142	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv1016301	chr5:8701920-8747142	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv1019577	chr5:8701920-8749764	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2757103	chr5:8701920-8790546	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2759321	chr5:8701920-8790546	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1030265	chr5:8702102-8747142	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv1027237	chr5:8702102-8749764	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1793153	chr5:8702228-8747142	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	nsv1020362	chr5:8702228-8747142	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
23	nsv1027787	chr5:8702228-8749764	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1797381	chr5:8702240-8747142	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
25	esv1794920	chr5:8702269-8748631	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv516885	chr5:8702372-8747106	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	nsv461932	chr5:8702372-8747106	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	nsv461933	chr5:8702372-8747106	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
29	nsv597033	chr5:8702372-8747106	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	nsv436978	chr5:8702372-8749282	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv436979	chr5:8702372-8749282	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv880842	chr5:8702372-8753733	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv597034	chr5:8702372-8757690	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv881507	chr5:8702372-8757690	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv1798306	chr5:8702381-8750841	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8702200-8710600	Weak transcription	Fetal Lung	lung

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