Variant report

Variant	rs200016
Chromosome Location	chr5:8693465-8693466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10040826	1.00[ASN][1000 genomes]
rs10060970	1.00[ASN][1000 genomes]
rs10062575	1.00[ASN][1000 genomes]
rs10064896	1.00[ASN][1000 genomes]
rs10066543	1.00[ASN][1000 genomes]
rs10071702	1.00[ASN][1000 genomes]
rs10214050	1.00[ASN][1000 genomes]
rs12187730	1.00[ASN][1000 genomes]
rs12517114	1.00[ASN][1000 genomes]
rs13355566	1.00[ASN][1000 genomes]
rs13357083	1.00[ASN][1000 genomes]
rs13361593	1.00[ASN][1000 genomes]
rs1392958	1.00[ASN][1000 genomes]
rs1501346	1.00[ASN][1000 genomes]
rs16881001	1.00[ASN][1000 genomes]
rs16881003	1.00[ASN][1000 genomes]
rs17221177	1.00[ASN][1000 genomes]
rs17222920	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199189	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs199996	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200007	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388359	1.00[ASN][1000 genomes]
rs2388360	1.00[ASN][1000 genomes]
rs2388361	1.00[ASN][1000 genomes]
rs2388362	1.00[ASN][1000 genomes]
rs2388363	1.00[ASN][1000 genomes]
rs2388364	1.00[ASN][1000 genomes]
rs4404653	1.00[ASN][1000 genomes]
rs60571534	1.00[ASN][1000 genomes]
rs62355864	1.00[ASN][1000 genomes]
rs62357917	1.00[ASN][1000 genomes]
rs6859923	1.00[ASN][1000 genomes]
rs6859933	1.00[ASN][1000 genomes]
rs722201	1.00[ASN][1000 genomes]
rs722202	1.00[ASN][1000 genomes]
rs722203	1.00[ASN][1000 genomes]
rs736970	1.00[ASN][1000 genomes]
rs73738746	1.00[ASN][1000 genomes]
rs7703856	1.00[ASN][1000 genomes]
rs7707778	1.00[ASN][1000 genomes]
rs7715870	1.00[ASN][1000 genomes]
rs7726627	1.00[ASN][1000 genomes]
rs7728052	1.00[ASN][1000 genomes]
rs7732493	1.00[ASN][1000 genomes]
rs7732609	1.00[ASN][1000 genomes]
rs7737474	1.00[ASN][1000 genomes]
rs9313248	1.00[ASN][1000 genomes]
rs9313250	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032346	chr5:8522331-8747061	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537636	chr5:8522331-8747061	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033498	chr5:8554438-8702228	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv537637	chr5:8690735-8730509	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs200016	ADAMTS16	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8693000-8697600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links