Variant report

Variant	rs200316127
Chromosome Location	chr3:100353874-100353875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:100353491-100354136	SK-N-SH	brain:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
2	CTCF	chr3:100353780-100353930	BE2_C	brain:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
3	CTCF	chr3:100353780-100353930	AG04449	skin:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
4	CTCF	chr3:100353820-100353970	HRE	kidney:	n/a	chr3:100353821-100353839 chr3:100353826-100353834
5	USF2	chr3:100353824-100353951	GM12878	blood:	n/a	n/a
6	CTCF	chr3:100353840-100353990	HMF	breast:	n/a	n/a
7	CTCF	chr3:100353724-100353980	GM12878	blood:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
8	BHLHE40	chr3:100353702-100354034	K562	blood:	n/a	n/a
9	CTCF	chr3:100353820-100353970	HEEpiC	esophagus:	n/a	chr3:100353821-100353839 chr3:100353826-100353834
10	MYC	chr3:100353765-100353997	NB4	blood:	n/a	n/a
11	CTCF	chr3:100353800-100353950	AG09309	skin:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
12	CTCF	chr3:100353719-100353978	MCF-7	breast:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
13	RAD21	chr3:100353583-100354144	HCT-116	colon:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
14	RCOR1	chr3:100353736-100354013	K562	blood:	n/a	n/a
15	IRF1	chr3:100353739-100354337	K562	blood:	n/a	n/a
16	CTCF	chr3:100353740-100353890	AG04449	skin:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
17	CTCF	chr3:100353689-100353949	HepG2	liver:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
18	CTCF	chr3:100353776-100353907	GM10266	blood:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
19	CTCF	chr3:100353780-100353960	Fibrobl	skin:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
20	CTCF	chr3:100353740-100353890	HMF	breast:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
21	EP300	chr3:100353761-100353930	GM12878	blood:	n/a	n/a
22	RAD21	chr3:100353598-100354033	GM12878	blood:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
23	CTCF	chr3:100353760-100353910	HBMEC	blood vessel:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
24	CTCF	chr3:100353642-100353998	MCF-7	breast:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
25	RAD21	chr3:100353722-100353902	GM12878	blood:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
26	CTCF	chr3:100353643-100354022	K562	blood:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
27	CTCF	chr3:100353777-100353965	ProgFib	skin:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
28	RAD21	chr3:100353595-100354100	A549	lung:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
29	CTCF	chr3:100353768-100353924	HepG2	liver:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
30	RAD21	chr3:100353684-100354058	SK-N-SH_RA	brain:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
31	CTCF	chr3:100353800-100353950	GM12874	blood:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
32	MAX	chr3:100353578-100354064	HepG2	liver:	n/a	n/a
33	CTCF	chr3:100353616-100354077	MCF-7	breast:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
34	MYC	chr3:100353702-100354041	MCF-7	breast:	n/a	n/a
35	CTCF	chr3:100353800-100353950	HMEC	breast:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
36	STAT3	chr3:100353763-100354209	MCF10A-Er-Src	breast:	n/a	n/a
37	CTCF	chr3:100353766-100353990	MCF-7	breast:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
38	MYC	chr3:100353804-100353945	MCF-7	breast:	n/a	n/a
39	JUND	chr3:100353717-100354005	K562	blood:	n/a	n/a
40	CTCF	chr3:100353820-100353970	AG09309	skin:	n/a	chr3:100353821-100353839 chr3:100353826-100353834
41	CTCF	chr3:100353773-100353979	GM12892	blood:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
42	ZNF384	chr3:100353760-100353948	K562	blood:	n/a	n/a
43	MYBL2	chr3:100353606-100354088	HepG2	liver:	n/a	n/a
44	CTCF	chr3:100353827-100353921	H1-hESC	embryonic stem cell:	n/a	n/a
45	RAD21	chr3:100353644-100354002	H1-hESC	embryonic stem cell:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
46	RAD21	chr3:100353713-100353943	A549	lung:	n/a	chr3:100353822-100353835 chr3:100353819-100353838
47	EBF1	chr3:100353745-100353953	GM12878	blood:	n/a	n/a
48	CTCF	chr3:100353482-100354061	SK-N-SH	brain:	n/a	chr3:100353821-100353839 chr3:100353816-100353837 chr3:100353826-100353834
49	FOXA2	chr3:100353710-100354008	HepG2	liver:	n/a	n/a
50	MAX	chr3:100353705-100354013	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:100322114..100322780-chr3:100353316..100353989,3	MCF-7	breast:
2	chr3:100321992..100322818-chr3:100353419..100354308,2	MCF-7	breast:
3	chr3:100325407..100326196-chr3:100353394..100354270,2	MCF-7	breast:
4	chr3:100348848..100350394-chr3:100351417..100354134,2	K562	blood:
5	chr3:100181153..100182757-chr3:100352927..100354311,7	MCF-7	breast:

Variant related genes	Relation type
GPR128	TF binding region

Extended variants
information (count: 76 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751965	chr3:100299310-100462527	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2751966	chr3:100299310-100468500	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2756284	chr3:100299329-100427937	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2752830	chr3:100299329-100442478	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv432464	chr3:100299329-100442478	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv2751967	chr3:100299329-100455139	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2751968	chr3:100299329-100476713	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv432466	chr3:100299329-100476713	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv536667	chr3:100308355-100445857	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv460770	chr3:100310812-100433592	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv591150	chr3:100310812-100433592	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv2751969	chr3:100312499-100479384	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	esv2763708	chr3:100317928-100442509	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv591151	chr3:100322043-100433592	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1006559	chr3:100324275-100427937	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv877219	chr3:100324442-100400733	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv516418	chr3:100324442-100433592	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv460771	chr3:100324442-100433592	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv591152	chr3:100324442-100433592	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv877220	chr3:100324442-100467018	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv1007742	chr3:100326173-100441716	Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv1014117	chr3:100326173-100442478	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
23	nsv591153	chr3:100335088-100437892	Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
24	nsv591154	chr3:100335088-100439278	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv591155	chr3:100335088-100444854	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
26	nsv591156	chr3:100335088-100451133	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	nsv591157	chr3:100335088-100455139	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
28	nsv869920	chr3:100336028-100437968	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv1008743	chr3:100340056-100419735	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv1004887	chr3:100340056-100420251	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
31	nsv1005369	chr3:100340056-100421065	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv1009705	chr3:100340056-100423589	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv1006045	chr3:100340056-100427937	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv1002624	chr3:100340056-100441716	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	nsv1006373	chr3:100340056-100442386	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv1006303	chr3:100340056-100442478	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
37	nsv1006402	chr3:100340056-100446966	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
38	nsv999432	chr3:100340056-100448183	Genic enhancers Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	nsv1013021	chr3:100340535-100427937	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
40	nsv1008949	chr3:100342190-100442478	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	nsv1007437	chr3:100342190-100448183	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	nsv432467	chr3:100342310-100442310	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
43	esv2751970	chr3:100342310-100442478	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
44	nsv432468	chr3:100342310-100442478	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
45	esv2751971	chr3:100342493-100468500	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
46	esv2751972	chr3:100342493-100493062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
47	nsv432469	chr3:100342493-100493062	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
48	nsv591158	chr3:100345201-100410724	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
49	nsv591159	chr3:100346146-100444854	Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
50	nsv1002525	chr3:100350244-100421065	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100348600-100354200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:100350600-100354000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:100352600-100354600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:100352800-100354000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:100352800-100354800	Enhancers	Fetal Intestine Small	intestine
6	chr3:100353200-100354000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:100353400-100354000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:100353400-100354000	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:100353400-100354000	Enhancers	HSMMtube	muscle
10	chr3:100353400-100354400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:100353400-100354600	Enhancers	Stomach Mucosa	stomach
12	chr3:100353600-100354000	Enhancers	Fetal Brain Male	brain
13	chr3:100353600-100354400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:100353600-100354400	Enhancers	HMEC	breast
15	chr3:100353600-100354400	Enhancers	K562	blood
16	chr3:100353800-100354000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:100353800-100354000	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr3:100353800-100354400	Enhancers	Pancreas	Pancrea
19	chr3:100353800-100354400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr3:100353800-100354400	Flanking Active TSS	HepG2	liver
21	chr3:100353800-100354600	Active TSS	Liver	Liver
22	chr3:100353800-100355200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:100353800-100356200	Enhancers	Fetal Intestine Large	intestine

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