Variant report

Variant	rs200359
Chromosome Location	chr20:22258533-22258534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs169228	0.81[ASN][1000 genomes]
rs199782	0.81[ASN][1000 genomes]
rs199783	0.93[ASN][1000 genomes]
rs199792	0.91[ASN][1000 genomes]
rs200364	0.81[ASN][1000 genomes]
rs200365	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs200367	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs200370	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs200371	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs427808	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6137596	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs709009	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs804691	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs804692	0.81[ASN][1000 genomes]
rs804693	0.81[ASN][1000 genomes]
rs804699	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv962639	chr20:22254826-22283685	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22257600-22259000	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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