Variant report
| Variant | rs200365 |
|---|---|
| Chromosome Location | chr20:22252549-22252550 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1429447 | 0.82[ASN][1000 genomes] |
| rs169228 | 0.87[ASN][1000 genomes] |
| rs199782 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs199783 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs199792 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs200359 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs200364 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs200367 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs200368 | 0.83[CEU][hapmap];0.86[JPT][hapmap] |
| rs200370 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs200371 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs383250 | 0.82[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap] |
| rs427808 | 0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6137590 | 0.81[ASN][1000 genomes] |
| rs6137596 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6137611 | 1.00[YRI][hapmap] |
| rs709009 | 0.84[CEU][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs804691 | 0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs804692 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs804693 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs804699 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058137 | chr20:21549350-22295051 | Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv544212 | chr20:22233715-22256861 | Enhancers Weak transcription | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv962562 | chr20:22252222-22254826 | Enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22251000-22252600 | Enhancers | Fetal Stomach | stomach |
