Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs169228	0.82[ASN][1000 genomes]
rs199782	0.82[ASN][1000 genomes]
rs199783	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs199792	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs200359	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs200364	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs200365	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs200367	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs200368	0.87[JPT][hapmap]
rs200370	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs200371	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs383250	0.96[CHB][hapmap];0.87[JPT][hapmap]
rs427808	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6137590	0.90[ASN][1000 genomes]
rs6137596	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6137611	1.00[YRI][hapmap]
rs709009	0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs804687	0.80[ASN][1000 genomes]
rs804692	0.82[ASN][1000 genomes]
rs804693	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv544212	chr20:22233715-22256861	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22242600-22251200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr20:22248600-22249600	Enhancers	Dnd41	blood

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