Variant report
| Variant | rs2004119 |
|---|---|
| Chromosome Location | chr14:81014191-81014192 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10136913 | 0.82[EUR][1000 genomes] |
| rs10138323 | 0.81[EUR][1000 genomes] |
| rs10138394 | 0.81[EUR][1000 genomes] |
| rs10140829 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10140856 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10148916 | 0.82[EUR][1000 genomes] |
| rs10151741 | 0.81[EUR][1000 genomes] |
| rs10152021 | 0.81[EUR][1000 genomes] |
| rs10162521 | 0.82[EUR][1000 genomes] |
| rs12587768 | 0.82[EUR][1000 genomes] |
| rs1530769 | 0.82[EUR][1000 genomes] |
| rs1530770 | 0.82[EUR][1000 genomes] |
| rs1530771 | 0.80[EUR][1000 genomes] |
| rs1968656 | 0.81[EUR][1000 genomes] |
| rs2019257 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2122424 | 0.82[EUR][1000 genomes] |
| rs2122425 | 0.82[EUR][1000 genomes] |
| rs2122426 | 0.81[EUR][1000 genomes] |
| rs6574586 | 0.82[EUR][1000 genomes] |
| rs6574587 | 0.82[EUR][1000 genomes] |
| rs6574588 | 0.81[EUR][1000 genomes] |
| rs6574589 | 0.81[EUR][1000 genomes] |
| rs7140221 | 0.81[EUR][1000 genomes] |
| rs7155907 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7159763 | 0.82[EUR][1000 genomes] |
| rs7492330 | 0.81[EUR][1000 genomes] |
| rs8009045 | 0.82[EUR][1000 genomes] |
| rs8011532 | 0.81[EUR][1000 genomes] |
| rs8013422 | 0.81[EUR][1000 genomes] |
| rs8014418 | 0.82[EUR][1000 genomes] |
| rs8014433 | 0.82[EUR][1000 genomes] |
| rs8016769 | 0.80[EUR][1000 genomes] |
| rs8017669 | 0.82[EUR][1000 genomes] |
| rs8017890 | 0.81[EUR][1000 genomes] |
| rs8018483 | 0.82[EUR][1000 genomes] |
| rs8018754 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869348 | chr14:80921098-81535754 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:81003400-81015600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr14:81013200-81023800 | Weak transcription | Dnd41 | blood |
