Variant report

Variant	rs2019257
Chromosome Location	chr14:81014130-81014131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10136913	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10138323	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs10138394	0.88[EUR][1000 genomes]
rs10140829	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10140856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148845	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10148916	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10151741	0.89[EUR][1000 genomes]
rs10152021	0.89[EUR][1000 genomes]
rs10162521	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12587768	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1530766	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1530769	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1530770	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1530771	0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs1530772	0.80[EUR][1000 genomes]
rs1551069	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1968656	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2004119	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2122424	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2122425	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2122426	0.83[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2371331	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4903925	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6574586	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574587	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6574588	0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574589	0.89[EUR][1000 genomes]
rs7140221	0.89[EUR][1000 genomes]
rs7147605	0.84[EUR][1000 genomes]
rs7154869	0.86[EUR][1000 genomes]
rs7155907	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159763	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7161731	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7350746	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7492330	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs8004071	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8004110	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs8005988	0.83[EUR][1000 genomes]
rs8009045	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8011469	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8011532	0.89[EUR][1000 genomes]
rs8013422	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8014418	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8014433	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8016769	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8017669	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8017890	0.89[EUR][1000 genomes]
rs8018399	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs8018483	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8018754	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81003400-81015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:81013200-81023800	Weak transcription	Dnd41	blood

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