Variant report

Variant	rs4903925
Chromosome Location	chr14:81025184-81025185
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10136913	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10138323	0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10138394	0.93[ASN][1000 genomes]
rs10140829	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10140856	0.82[ASN][1000 genomes]
rs10145466	0.89[ASN][1000 genomes]
rs10148845	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10148916	0.98[ASN][1000 genomes]
rs10151741	0.95[ASN][1000 genomes]
rs10152021	0.95[ASN][1000 genomes]
rs10162521	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10873331	0.85[CEU][hapmap];0.89[ASN][1000 genomes]
rs11629279	0.87[ASN][1000 genomes]
rs12587768	0.98[ASN][1000 genomes]
rs1530766	0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1530769	0.98[ASN][1000 genomes]
rs1530770	0.88[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1530771	0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs1530772	0.91[ASN][1000 genomes]
rs1551069	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1968656	0.98[ASN][1000 genomes]
rs1968657	0.83[ASN][1000 genomes]
rs2019257	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2122424	0.88[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2122425	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2122426	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2122428	0.88[ASN][1000 genomes]
rs2371331	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6574586	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs6574587	0.81[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6574588	0.88[CHB][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs6574589	0.95[ASN][1000 genomes]
rs7140221	0.95[ASN][1000 genomes]
rs7147605	0.96[ASN][1000 genomes]
rs7154869	0.94[ASN][1000 genomes]
rs7159763	0.98[ASN][1000 genomes]
rs7161731	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7350746	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7492330	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs8004071	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs8004110	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs8004240	0.88[ASN][1000 genomes]
rs8005988	0.86[ASN][1000 genomes]
rs8009045	0.80[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs8011469	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs8011532	0.96[ASN][1000 genomes]
rs8013422	0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs8014418	0.98[ASN][1000 genomes]
rs8014433	0.98[ASN][1000 genomes]
rs8016769	0.94[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs8017669	0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs8017890	0.95[ASN][1000 genomes]
rs8018399	0.92[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018483	0.98[ASN][1000 genomes]
rs8018754	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81021800-81025400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:81024800-81029400	Weak transcription	Dnd41	blood

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