Variant report

Variant	rs10140829
Chromosome Location	chr14:81018177-81018178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10136913	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10138323	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs10138394	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs10140856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148845	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10148916	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10151741	0.88[EUR][1000 genomes]
rs10152021	0.88[EUR][1000 genomes]
rs10162521	0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12587768	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530766	0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1530769	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530770	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530771	0.82[CEU][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1551069	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1968656	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2004119	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2019257	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2122424	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2122425	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2122426	0.85[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs2122428	0.80[EUR][1000 genomes]
rs2371331	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4903925	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6574586	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6574587	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs6574588	0.80[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6574589	0.88[EUR][1000 genomes]
rs7140221	0.88[EUR][1000 genomes]
rs7147605	0.83[EUR][1000 genomes]
rs7154869	0.85[EUR][1000 genomes]
rs7155907	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7159763	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7161731	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs7350746	0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs7492330	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs8004071	0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs8004110	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs8005988	0.83[EUR][1000 genomes]
rs8009045	0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8011469	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs8011532	0.88[EUR][1000 genomes]
rs8013422	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8014418	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8014433	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8016769	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8017669	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8017890	0.88[EUR][1000 genomes]
rs8018399	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8018483	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8018754	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10140829	POMT2	cis	cerebellum	SCAN
rs10140829	C14orf145	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81013200-81023800	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links