Variant report

Variant	rs1551069
Chromosome Location	chr14:81076176-81076177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81075319..81077418-chr14:81079123..81081073,2	K562	blood:
2	chr14:81071464..81074082-chr14:81074931..81076557,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10136913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10138323	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10138394	0.88[CEU][hapmap];0.88[ASN][1000 genomes]
rs10140829	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10145466	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10148845	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10148916	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10151741	0.86[ASN][1000 genomes]
rs10152021	0.86[ASN][1000 genomes]
rs10162521	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10873331	0.96[CEU][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11629279	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12587768	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1530766	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530769	0.85[ASN][1000 genomes]
rs1530770	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1530771	0.84[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1968656	0.85[ASN][1000 genomes]
rs2019257	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2122424	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2122425	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2122426	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2122428	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2371331	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4903925	0.81[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4903928	0.85[YRI][hapmap]
rs4903929	0.85[YRI][hapmap]
rs6574586	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6574587	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6574588	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6574589	0.86[ASN][1000 genomes]
rs7140221	0.86[ASN][1000 genomes]
rs7147605	0.82[ASN][1000 genomes]
rs7154869	0.80[ASN][1000 genomes]
rs7159763	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7161731	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7350746	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7492330	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8004071	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8004110	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8004240	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8009045	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8011469	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8011532	0.82[ASN][1000 genomes]
rs8013422	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8014418	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8014433	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8016769	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8017669	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8017890	0.86[ASN][1000 genomes]
rs8018399	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8018483	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8018754	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81074800-81076600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:81075200-81076200	Enhancers	A549	lung
4	chr14:81076000-81079400	Weak transcription	Pancreas	Pancrea

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