Variant report

Variant	rs200513
Chromosome Location	chr13:30907209-30907210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30905394..30908859-chr13:30911466..30914534,3	MCF-7	breast:
2	chr13:30883453..30886159-chr13:30906856..30910683,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12583912	0.92[ASN][1000 genomes]
rs17074553	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs200524	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs202080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs202081	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs202100	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315003	1.00[YRI][hapmap]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
3	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
4	chr13:30903600-30914000	Weak transcription	Aorta	Aorta
5	chr13:30903800-30912000	Weak transcription	NHDF-Ad	bronchial
6	chr13:30904400-30909400	Weak transcription	Fetal Thymus	thymus
7	chr13:30905200-30907800	Enhancers	Colon Smooth Muscle	Colon
8	chr13:30905400-30908200	Enhancers	Fetal Intestine Small	intestine
9	chr13:30905600-30908400	Enhancers	Primary B cells from peripheral blood	blood
10	chr13:30905800-30909000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:30905800-30909000	Weak transcription	Brain Angular Gyrus	brain
12	chr13:30905800-30909200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:30905800-30913600	Weak transcription	Fetal Stomach	stomach
14	chr13:30905800-30913600	Weak transcription	Right Atrium	heart
15	chr13:30905800-30913600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr13:30905800-30914000	Weak transcription	Fetal Lung	lung
17	chr13:30905800-30914000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr13:30906000-30909200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr13:30906200-30908200	Enhancers	Fetal Intestine Large	intestine
20	chr13:30906400-30907400	Enhancers	Duodenum Mucosa	Duodenum
21	chr13:30906400-30908400	Enhancers	Primary B cells from cord blood	blood
22	chr13:30906400-30909200	Weak transcription	Brain Hippocampus Middle	brain
23	chr13:30906400-30909200	Weak transcription	Brain Substantia Nigra	brain
24	chr13:30906600-30907800	Enhancers	GM12878-XiMat	blood
25	chr13:30906600-30909000	Weak transcription	Adipose Nuclei	Adipose
26	chr13:30906600-30909000	Weak transcription	Brain Anterior Caudate	brain
27	chr13:30906600-30912000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:30906600-30913800	Weak transcription	Right Ventricle	heart
29	chr13:30906800-30910600	Weak transcription	Hela-S3	cervix
30	chr13:30906800-30912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:30907000-30907400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr13:30907000-30907400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr13:30907000-30908000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr13:30907000-30909200	Weak transcription	Dnd41	blood
35	chr13:30907000-30911800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr13:30907000-30913800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr13:30907200-30912000	Weak transcription	Fetal Heart	heart

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