Variant report

Variant	rs202080
Chromosome Location	chr13:30879318-30879319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12583912	0.85[ASN][1000 genomes]
rs17074553	1.00[CHB][hapmap]
rs200513	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs200524	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs202081	1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs202100	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30843000-30880200	Weak transcription	Fetal Stomach	stomach
2	chr13:30859800-30879600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:30864400-30879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
7	chr13:30869600-30879400	Weak transcription	Brain Substantia Nigra	brain
8	chr13:30870800-30880400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:30871000-30880400	Weak transcription	Fetal Intestine Small	intestine
10	chr13:30871000-30880400	Weak transcription	Right Ventricle	heart
11	chr13:30873800-30879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:30873800-30879600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:30875000-30879400	Weak transcription	HSMM	muscle
14	chr13:30876000-30880600	Enhancers	Fetal Brain Male	brain
15	chr13:30876200-30880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:30876200-30880600	Weak transcription	Ovary	ovary
17	chr13:30876400-30879600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:30876400-30879600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:30876400-30879600	Weak transcription	Psoas Muscle	Psoas
20	chr13:30876400-30880800	Weak transcription	Lung	lung
21	chr13:30876600-30880600	Enhancers	Fetal Heart	heart
22	chr13:30876800-30880200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr13:30877000-30879400	Weak transcription	Fetal Lung	lung
24	chr13:30877000-30879400	Weak transcription	NHEK	skin
25	chr13:30877000-30880600	Enhancers	Primary B cells from cord blood	blood
26	chr13:30877200-30880400	Enhancers	HepG2	liver
27	chr13:30877200-30880600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr13:30877400-30879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:30877400-30879400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr13:30877400-30879600	Enhancers	Adipose Nuclei	Adipose
31	chr13:30877400-30879600	Enhancers	Fetal Thymus	thymus
32	chr13:30877400-30879800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:30877400-30879800	Weak transcription	Brain Angular Gyrus	brain
34	chr13:30877400-30880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr13:30877400-30880600	Enhancers	Primary B cells from peripheral blood	blood
36	chr13:30877600-30879400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:30877600-30879400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr13:30877800-30880400	Flanking Active TSS	Dnd41	blood
39	chr13:30877800-30880800	Weak transcription	Spleen	Spleen
40	chr13:30878000-30879400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr13:30878000-30879400	Weak transcription	HUVEC	blood vessel
42	chr13:30878000-30880200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr13:30878000-30880200	Enhancers	K562	blood
44	chr13:30878000-30880600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr13:30878000-30880600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr13:30878200-30879400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr13:30878200-30879600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:30878200-30879600	Enhancers	Fetal Brain Female	brain
49	chr13:30878200-30879600	Weak transcription	A549	lung
50	chr13:30878200-30879600	Weak transcription	Osteobl	bone

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