Variant report

Variant	rs202100
Chromosome Location	chr13:30896930-30896931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr13:30896598-30896948	K562	blood:	n/a	n/a
2	HDAC2	chr13:30896717-30896953	K562	blood:	n/a	n/a
3	RCOR1	chr13:30896629-30897104	K562	blood:	n/a	n/a
4	STAT5A	chr13:30896538-30896985	K562	blood:	n/a	chr13:30896775-30896784 chr13:30896774-30896783
5	TAL1	chr13:30896581-30896965	K562	blood:	n/a	n/a
6	TEAD4	chr13:30896580-30897000	K562	blood:	n/a	n/a
7	RCOR1	chr13:30896571-30897001	K562	blood:	n/a	n/a
8	ZNF384	chr13:30896570-30896958	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30880917..30883470-chr13:30895639..30898288,2	K562	blood:

Variant related genes	Relation type
LINC00427	TF binding region
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12583912	0.92[ASN][1000 genomes]
rs17074553	0.83[ASN][1000 genomes]
rs200513	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200524	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs202080	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs202081	0.91[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
3	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30886000-30898400	Weak transcription	Lung	lung
5	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
7	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
8	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
10	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
13	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
14	chr13:30894200-30897400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr13:30894200-30897400	Weak transcription	NHLF	lung
16	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
17	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:30894600-30897600	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
21	chr13:30895800-30898000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr13:30896000-30899600	Weak transcription	Fetal Heart	heart
23	chr13:30896800-30897000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:30896800-30897000	Enhancers	Left Ventricle	heart
25	chr13:30896800-30897200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:30896800-30897400	ZNF genes & repeats	Aorta	Aorta
27	chr13:30896800-30898000	Enhancers	K562	blood
28	chr13:30896800-30898200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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