Variant report

Variant	rs2010233
Chromosome Location	chr6:15091170-15091171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:15088842-15091205	K562	blood:	n/a	n/a
2	POLR2A	chr6:15088866-15091960	PBDE	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15089709..15092214-chr6:15313838..15315490,2	MCF-7	breast:
2	chr6:15085986..15094450-chr6:15243173..15249347,32	MCF-7	breast:
3	chr6:15091017..15092854-chr6:15217846..15219401,2	MCF-7	breast:
4	chr17:57919370..57922222-chr6:15090266..15091829,2	MCF-7	breast:
5	chr6:15087697..15092455-chr6:15243972..15249952,11	K562	blood:
6	chr6:15090854..15092609-chr6:15247191..15248815,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000234261	TF binding region
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000201367	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1622305	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1770341	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1770342	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2474107	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2747484	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2747485	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2747487	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2747488	0.93[ASN][1000 genomes]
rs2791608	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2791611	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3935737	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62397260	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7753952	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:15087200-15091600	Enhancers	Placenta	Placenta
3	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
4	chr6:15089000-15091800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:15089400-15091200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:15089400-15091400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:15089600-15091800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:15089800-15091800	Flanking Active TSS	K562	blood
9	chr6:15090000-15091400	Enhancers	Primary B cells from cord blood	blood
10	chr6:15090000-15091400	Enhancers	Fetal Muscle Leg	muscle
11	chr6:15090200-15091200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:15090200-15091400	Enhancers	Fetal Thymus	thymus
13	chr6:15090200-15092800	Weak transcription	Esophagus	oesophagus
14	chr6:15090400-15092800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:15090400-15094200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:15090600-15091400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:15090800-15096800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:15091000-15091400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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