Variant report

Variant	rs3935737
Chromosome Location	chr6:15082283-15082284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1622305	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770341	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1770342	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2010233	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2474107	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2747484	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2747485	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2747487	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2747488	0.83[ASN][1000 genomes]
rs2791608	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2791611	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62397260	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7753952	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3935737	DKFZP434A0131	trans	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15078600-15082600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15078600-15083200	Enhancers	Fetal Intestine Large	intestine
6	chr6:15078600-15083800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15080200-15083800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:15080200-15086600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:15080400-15086800	Weak transcription	Right Atrium	heart
12	chr6:15082000-15082600	Enhancers	K562	blood
13	chr6:15082000-15086800	Weak transcription	Stomach Mucosa	stomach
14	chr6:15082200-15086600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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