Variant report

Variant	rs7753952
Chromosome Location	chr6:15085174-15085175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1622305	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1770341	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1770342	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2010233	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2474107	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2747484	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2747485	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2747487	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2747488	0.83[ASN][1000 genomes]
rs2791608	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2791611	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3935737	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62397260	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:15080200-15086600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:15080400-15086800	Weak transcription	Right Atrium	heart
8	chr6:15082000-15086800	Weak transcription	Stomach Mucosa	stomach
9	chr6:15082200-15086600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:15083200-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:15083800-15086200	Enhancers	K562	blood
12	chr6:15083800-15088200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:15084000-15086800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:15084200-15085400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:15084800-15085200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:15085000-15085400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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