Variant report

Variant	rs2012459
Chromosome Location	chr15:43690481-43690482
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3803329	0.83[EUR][1000 genomes]
rs3803333	0.83[EUR][1000 genomes]
rs3803339	0.83[EUR][1000 genomes]
rs3825791	0.83[EUR][1000 genomes]
rs45520633	0.83[EUR][1000 genomes]
rs45570332	0.83[EUR][1000 genomes]
rs61757241	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43664000-43692600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:43664600-43695600	Weak transcription	Fetal Heart	heart
3	chr15:43665000-43730000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:43668000-43717800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:43668200-43702200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:43668200-43732800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:43670600-43703200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:43675600-43744400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:43676800-43695600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:43678400-43693800	Weak transcription	Small Intestine	intestine
11	chr15:43681400-43702200	Strong transcription	Fetal Intestine Small	intestine
12	chr15:43682800-43698600	Strong transcription	Fetal Stomach	stomach
13	chr15:43682800-43720800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:43682800-43727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:43683200-43709000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:43683400-43732200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:43684800-43692600	Strong transcription	Hela-S3	cervix
18	chr15:43684800-43694400	Strong transcription	Lung	lung
19	chr15:43684800-43705000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:43684800-43709000	Strong transcription	Dnd41	blood
21	chr15:43685000-43701800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:43685000-43702200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:43685000-43709000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:43685000-43709000	Strong transcription	Left Ventricle	heart
25	chr15:43685000-43720400	Strong transcription	Fetal Brain Female	brain
26	chr15:43685400-43707800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:43685800-43710200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:43686000-43692400	Strong transcription	Fetal Kidney	kidney
29	chr15:43686000-43701000	Strong transcription	K562	blood
30	chr15:43686000-43702800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:43686000-43703400	Strong transcription	Adipose Nuclei	Adipose
32	chr15:43686000-43717200	Strong transcription	Primary B cells from cord blood	blood
33	chr15:43686000-43717200	Strong transcription	Fetal Lung	lung
34	chr15:43686000-43720600	Strong transcription	Brain Germinal Matrix	brain
35	chr15:43686000-43727000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:43686400-43698400	Strong transcription	Liver	Liver
37	chr15:43686400-43702200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:43686400-43702200	Strong transcription	Gastric	stomach
39	chr15:43686400-43709200	Strong transcription	Fetal Thymus	thymus
40	chr15:43686400-43710000	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr15:43686400-43711200	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr15:43686400-43715400	Strong transcription	Fetal Intestine Large	intestine
43	chr15:43686600-43690600	Strong transcription	HMEC	breast
44	chr15:43686600-43691800	Strong transcription	HepG2	liver
45	chr15:43686600-43692000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:43686600-43698600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:43686600-43702800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:43686600-43703000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:43686600-43703200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:43686600-43705600	Strong transcription	Primary monocytes fromperipheralblood	blood

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