Variant report

Variant	rs3825791
Chromosome Location	chr15:43804805-43804806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43803434..43805458-chr15:43818001..43820886,2	K562	blood:
2	15:43802874-43806906..15:44001645-44015047	Hela-S3	cervix:
3	chr15:43803384..43806357-chr15:43806530..43809692,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166763	Chromatin interaction
ENSG00000238494	Chromatin interaction
ENSG00000242866	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12050645	0.83[EUR][1000 genomes]
rs2012459	0.83[EUR][1000 genomes]
rs3803329	1.00[EUR][1000 genomes]
rs3803333	1.00[EUR][1000 genomes]
rs3803339	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45520633	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45570332	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61757241	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv515877	chr15:43802024-43818052	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518707	chr15:43802024-43826557	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv832988	chr15:43804641-43976862	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43802400-43806400	Weak transcription	Small Intestine	intestine
2	chr15:43803600-43808400	Weak transcription	Psoas Muscle	Psoas
3	chr15:43803600-43809400	Weak transcription	Aorta	Aorta
4	chr15:43803600-43809400	Weak transcription	Lung	lung
5	chr15:43803800-43806000	Enhancers	K562	blood
6	chr15:43803800-43808400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:43803800-43808400	Weak transcription	Esophagus	oesophagus
8	chr15:43803800-43808600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:43803800-43809000	Weak transcription	Right Atrium	heart
10	chr15:43804000-43805200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:43804000-43805200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:43804000-43805400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:43804000-43805400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:43804000-43805600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:43804000-43805600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:43804000-43805600	Weak transcription	HUVEC	blood vessel
17	chr15:43804000-43805800	Weak transcription	Adipose Nuclei	Adipose
18	chr15:43804000-43806000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:43804000-43806000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:43804000-43806000	Weak transcription	NH-A	brain
21	chr15:43804000-43806400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:43804000-43806400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:43804000-43806400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:43804000-43806400	Weak transcription	Left Ventricle	heart
25	chr15:43804000-43806600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:43804000-43808000	Weak transcription	Ovary	ovary
27	chr15:43804000-43808000	Weak transcription	Right Ventricle	heart
28	chr15:43804000-43808000	Weak transcription	Spleen	Spleen
29	chr15:43804000-43808200	Weak transcription	Fetal Heart	heart
30	chr15:43804000-43808200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:43804000-43809200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:43804000-43809200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:43804000-43810000	Weak transcription	A549	lung
34	chr15:43804200-43805000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:43804200-43805000	Enhancers	Brain Substantia Nigra	brain
36	chr15:43804200-43805600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:43804200-43805600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:43804200-43805600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:43804200-43805600	Weak transcription	HSMM	muscle
40	chr15:43804200-43805600	Weak transcription	Osteobl	bone
41	chr15:43804200-43805800	Weak transcription	Fetal Stomach	stomach
42	chr15:43804200-43806000	Weak transcription	Primary T cells from cord blood	blood
43	chr15:43804200-43806000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:43804200-43806000	Enhancers	Dnd41	blood
45	chr15:43804200-43806000	Enhancers	NHLF	lung
46	chr15:43804200-43806200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:43804200-43806200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:43804200-43806200	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:43804200-43806400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr15:43804200-43806400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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