Variant report

Variant	rs3803339
Chromosome Location	chr15:43724532-43724533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43712554..43714359-chr15:43723352..43725981,2	K562	blood:
2	chr15:43717894..43720759-chr15:43722879..43724866,4	K562	blood:

Variant related genes	Relation type
ENSG00000067369	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12050645	0.83[EUR][1000 genomes]
rs2012459	0.83[EUR][1000 genomes]
rs3803329	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3803333	1.00[EUR][1000 genomes]
rs3825791	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45520633	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45570332	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61757241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43665000-43730000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:43668200-43732800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:43675600-43744400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:43682800-43727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:43683400-43732200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:43686000-43727000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:43686600-43726000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr15:43686600-43733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:43686600-43733800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:43686800-43725400	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:43686800-43725600	Strong transcription	Osteobl	bone
12	chr15:43686800-43733400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:43687000-43725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:43687000-43732200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:43687200-43733400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:43687600-43731600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:43689200-43737200	Weak transcription	Stomach Mucosa	stomach
18	chr15:43700000-43748400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:43703200-43739800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:43703600-43731400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:43703800-43724800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:43704200-43727200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:43709400-43741600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:43711400-43726400	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr15:43713200-43729600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr15:43713600-43750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:43714000-43748200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:43714400-43733000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr15:43715000-43747600	Weak transcription	Right Ventricle	heart
30	chr15:43715600-43748200	Weak transcription	Colonic Mucosa	Colon
31	chr15:43718400-43727200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:43719200-43725000	Strong transcription	NH-A	brain
33	chr15:43719200-43725800	Strong transcription	HSMM	muscle
34	chr15:43719200-43732400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:43719400-43726000	Strong transcription	Fetal Lung	lung
36	chr15:43719400-43731800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr15:43719800-43726600	Strong transcription	Primary B cells from cord blood	blood
38	chr15:43719800-43730200	Weak transcription	Hela-S3	cervix
39	chr15:43719800-43732800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:43719800-43733000	Weak transcription	A549	lung
41	chr15:43720400-43730000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:43720400-43730000	Weak transcription	NHEK	skin
43	chr15:43720600-43730000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:43721600-43726400	Strong transcription	Adipose Nuclei	Adipose
45	chr15:43721600-43726600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:43721600-43726600	Strong transcription	Dnd41	blood
47	chr15:43721600-43731800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:43721600-43732200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:43721600-43740200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:43721800-43724800	Strong transcription	Left Ventricle	heart

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