Variant report

Variant	rs2014810
Chromosome Location	chr3:160732547-160732548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160732451..160734009-chr3:160957436..160960399,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10154889	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10433352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11712713	0.84[EUR][1000 genomes]
rs11713987	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11715733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717272	0.85[AMR][1000 genomes]
rs11720263	0.84[AMR][1000 genomes]
rs11922957	0.86[AMR][1000 genomes]
rs11922959	0.86[AMR][1000 genomes]
rs12696112	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12696113	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12696114	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13060718	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13062651	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13071892	0.86[AMR][1000 genomes]
rs13098896	0.92[AMR][1000 genomes]
rs13256	0.86[AMR][1000 genomes]
rs13315565	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1374787	0.81[ASN][1000 genomes]
rs1562464	0.82[AMR][1000 genomes]
rs1599388	0.84[AMR][1000 genomes]
rs16831796	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16831886	0.85[AMR][1000 genomes]
rs2376476	0.84[ASN][1000 genomes]
rs2376477	0.82[ASN][1000 genomes]
rs34221255	0.84[EUR][1000 genomes]
rs34630898	0.86[AMR][1000 genomes]
rs35914913	0.87[AMR][1000 genomes]
rs4494975	0.84[AMR][1000 genomes]
rs4521287	0.87[AMR][1000 genomes]
rs4679928	0.82[ASN][1000 genomes]
rs4679929	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57145341	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441349	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6794882	0.83[AMR][1000 genomes]
rs6806015	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs68166680	0.86[AMR][1000 genomes]
rs73021215	0.91[AMR][1000 genomes]
rs73023235	0.84[AMR][1000 genomes]
rs7433918	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7610432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611005	0.82[ASN][1000 genomes]
rs7618455	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7618924	0.84[AMR][1000 genomes]
rs7624185	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7628389	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs964533	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9812507	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9822435	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9832109	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9857855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9862086	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9876142	0.90[AMR][1000 genomes]
rs9880269	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9883566	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2014810	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160726400-160732600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160732000-160734200	Enhancers	Colon Smooth Muscle	Colon
3	chr3:160732400-160732800	Enhancers	Psoas Muscle	Psoas
4	chr3:160732400-160732800	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:160732400-160733800	Enhancers	Left Ventricle	heart

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