Variant report

Variant	rs73023235
Chromosome Location	chr3:160864123-160864124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160822154..160825003-chr3:160861960..160864146,2	K562	blood:
2	chr3:160864038..160866583-chr3:160891018..160893791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169255	Chromatin interaction
ENSG00000169251	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10154889	0.83[AMR][1000 genomes]
rs10433352	0.84[AMR][1000 genomes]
rs11712713	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11715733	0.84[AMR][1000 genomes]
rs11717272	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11720263	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11915989	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11922957	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922959	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12696112	0.80[AMR][1000 genomes]
rs12696113	0.80[AMR][1000 genomes]
rs13060601	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13060718	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13061088	0.81[ASN][1000 genomes]
rs13071892	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13085336	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098896	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13256	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13315565	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1599388	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16831796	0.82[AMR][1000 genomes]
rs16831886	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2014810	0.84[AMR][1000 genomes]
rs34221255	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34630898	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35127376	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35589595	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35914913	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4494975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521287	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4679929	0.81[AMR][1000 genomes]
rs4856700	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57145341	0.82[AMR][1000 genomes]
rs6441362	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6772723	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6794882	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6806015	0.89[AMR][1000 genomes]
rs68166680	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73021215	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7610432	0.84[AMR][1000 genomes]
rs7618924	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7624185	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7628389	0.83[AMR][1000 genomes]
rs7638370	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs898677	0.84[AMR][1000 genomes]
rs964533	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9812507	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9822435	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9832109	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9857855	0.84[AMR][1000 genomes]
rs9862086	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9876142	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9880269	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9883566	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs73023235	SPTSSB	cis	Adipose Subcutaneous	GTEx
rs73023235	SPTSSB	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160850400-160882400	Weak transcription	Ovary	ovary
2	chr3:160860400-160866600	Weak transcription	NHDF-Ad	bronchial
3	chr3:160862200-160882400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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