Variant report

Variant	rs35127376
Chromosome Location	chr3:160927289-160927290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160926864..160930138-chr3:160930541..160935617,4	K562	blood:
2	chr3:160927027..160929410-chr3:161139082..161141538,2	MCF-7	breast:
3	chr3:160922110..160927957-chr3:161089020..161092502,5	MCF-7	breast:
4	chr3:160925870..160928763-chr3:160931086..160933417,3	MCF-7	breast:
5	chr3:160925099..160927911-chr3:160936780..160940290,4	MCF-7	breast:
6	chr3:160924095..160925710-chr3:160926793..160928479,2	MCF-7	breast:
7	chr3:160926134..160927862-chr3:160938885..160940757,2	MCF-7	breast:
8	chr3:160926575..160929147-chr3:160933647..160936135,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11717272	0.81[EUR][1000 genomes]
rs11720263	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11915989	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922957	0.82[EUR][1000 genomes]
rs11922959	0.83[EUR][1000 genomes]
rs13059758	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13060601	0.81[EUR][1000 genomes]
rs13071892	0.83[EUR][1000 genomes]
rs13085336	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13256	0.81[EUR][1000 genomes]
rs1599388	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16831886	0.82[EUR][1000 genomes]
rs28384382	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34105342	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34630898	0.83[EUR][1000 genomes]
rs34972965	0.80[AMR][1000 genomes]
rs35310734	0.83[ASN][1000 genomes]
rs35589595	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35914913	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4494975	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4521287	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4856700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441362	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66508859	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6772723	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6794882	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68166680	0.83[EUR][1000 genomes]
rs73023235	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73026974	0.80[AMR][1000 genomes]
rs73026976	0.80[AMR][1000 genomes]
rs7618924	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7638370	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647374	0.80[AMR][1000 genomes]
rs9876142	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs35127376	SPTSSB	cis	Nerve Tibial	GTEx
rs35127376	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL
rs35127376	SPTSSB	cis	Thyroid	GTEx
rs35127376	SPTSSB	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160926000-160938400	Weak transcription	Brain Substantia Nigra	brain

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