Variant report

Variant	rs7638370
Chromosome Location	chr3:160921793-160921794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160918538..160922822-chr3:160936820..160940887,5	MCF-7	breast:
2	chr3:160919580..160922275-chr3:160938762..160940326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11720263	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11915989	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922959	0.81[EUR][1000 genomes]
rs13059758	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13071892	0.81[EUR][1000 genomes]
rs13085336	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1599388	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28384382	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34105342	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34630898	0.81[EUR][1000 genomes]
rs34972965	0.80[AMR][1000 genomes]
rs35127376	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35310734	0.83[ASN][1000 genomes]
rs35589595	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35914913	0.81[EUR][1000 genomes]
rs4494975	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4856700	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441362	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66508859	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6772723	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6794882	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68166680	0.80[EUR][1000 genomes]
rs73023235	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73026974	0.80[AMR][1000 genomes]
rs73026976	0.80[AMR][1000 genomes]
rs7618924	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7647374	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7638370	SPTSSB	cis	Nerve Tibial	GTEx
rs7638370	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL
rs7638370	SPTSSB	cis	Thyroid	GTEx
rs7638370	SPTSSB	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160915000-160927000	Weak transcription	Aorta	Aorta
2	chr3:160921600-160921800	Enhancers	Lung	lung

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