Variant report

Variant	rs34221255
Chromosome Location	chr3:160854123-160854124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10154889	0.82[EUR][1000 genomes]
rs10433352	0.84[EUR][1000 genomes]
rs11712713	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11717272	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11720263	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11922957	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922959	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13060601	0.84[EUR][1000 genomes]
rs13060718	0.81[AMR][1000 genomes]
rs13061088	0.81[ASN][1000 genomes]
rs13062651	0.81[EUR][1000 genomes]
rs13071892	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13085336	0.82[EUR][1000 genomes]
rs13098896	0.81[AMR][1000 genomes]
rs13256	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13315565	0.83[AMR][1000 genomes]
rs1599388	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16831796	0.84[EUR][1000 genomes]
rs16831886	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2014810	0.84[EUR][1000 genomes]
rs34630898	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35914913	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4494975	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4521287	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57145341	0.84[EUR][1000 genomes]
rs6441362	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6772723	0.80[ASN][1000 genomes]
rs6794882	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6806015	0.83[AMR][1000 genomes]
rs68166680	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73021215	0.84[AMR][1000 genomes]
rs73023235	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7610432	0.84[EUR][1000 genomes]
rs7618924	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7628389	0.84[EUR][1000 genomes]
rs898677	0.84[EUR][1000 genomes]
rs964533	0.83[AMR][1000 genomes]
rs9812507	0.81[AMR][1000 genomes]
rs9822435	0.83[AMR][1000 genomes]
rs9832109	0.81[AMR][1000 genomes]
rs9857855	0.84[EUR][1000 genomes]
rs9862086	0.82[AMR][1000 genomes]
rs9876142	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9880269	0.82[AMR][1000 genomes]
rs9883566	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv963285	chr3:160848780-160856433	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34221255	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL
rs34221255	SPTSSB	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160844600-160859000	Weak transcription	Left Ventricle	heart
2	chr3:160850400-160882400	Weak transcription	Ovary	ovary
3	chr3:160853800-160856000	Weak transcription	Lung	lung

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