Variant report

Variant	rs201786
Chromosome Location	chr13:50992861-50992862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50696699..50698604-chr13:50990333..50993085,2	MCF-7	breast:
2	chr13:50991815..50995325-chr13:50995340..50998331,4	K562	blood:
3	chr13:50986197..50988129-chr13:50991660..50994011,2	K562	blood:
4	chr13:50992353..50994644-chr13:50995445..50997351,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1262872	0.84[ASN][1000 genomes]
rs149846	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17074346	0.88[ASN][1000 genomes]
rs201763	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201767	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201768	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201772	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201777	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201778	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201781	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201782	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201783	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201784	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201789	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201807	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56023535	0.82[ASN][1000 genomes]
rs56075206	0.82[ASN][1000 genomes]
rs61962133	0.82[ASN][1000 genomes]
rs719103	0.81[ASN][1000 genomes]
rs7334326	0.83[ASN][1000 genomes]
rs7983762	0.81[ASN][1000 genomes]
rs7996632	0.81[ASN][1000 genomes]
rs8000329	0.81[ASN][1000 genomes]
rs8000921	0.81[ASN][1000 genomes]
rs9316495	0.83[ASN][1000 genomes]
rs9562968	0.81[ASN][1000 genomes]
rs9562970	0.81[ASN][1000 genomes]
rs9562972	0.81[ASN][1000 genomes]
rs9562973	0.82[ASN][1000 genomes]
rs9568405	0.84[ASN][1000 genomes]
rs9568406	0.81[ASN][1000 genomes]
rs9568407	0.81[ASN][1000 genomes]
rs9568408	0.81[ASN][1000 genomes]
rs9568409	0.81[ASN][1000 genomes]
rs9568412	0.81[ASN][1000 genomes]
rs9568413	0.82[ASN][1000 genomes]
rs9568416	0.86[ASN][1000 genomes]
rs9634834	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50975400-50996200	Weak transcription	Right Ventricle	heart
2	chr13:50981200-50993000	Weak transcription	Fetal Heart	heart
3	chr13:50986800-50994800	Weak transcription	K562	blood
4	chr13:50986800-50995400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:50987200-50993200	Weak transcription	Fetal Lung	lung
6	chr13:50987200-50995600	Weak transcription	Fetal Kidney	kidney
7	chr13:50987400-50994000	Weak transcription	HSMMtube	muscle
8	chr13:50987600-50993400	Weak transcription	Fetal Stomach	stomach
9	chr13:50987600-50995200	Weak transcription	NH-A	brain
10	chr13:50987800-50994000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:50988000-50996200	Weak transcription	Aorta	Aorta
12	chr13:50988000-50996200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr13:50988400-50993200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:50989600-50993600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr13:50989600-50994000	Weak transcription	Osteobl	bone
16	chr13:50989800-50993600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:50992000-50994000	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:50992000-50994200	Weak transcription	Left Ventricle	heart
19	chr13:50992000-50994400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr13:50992200-50994400	Weak transcription	Psoas Muscle	Psoas
21	chr13:50992200-51014600	Weak transcription	HepG2	liver
22	chr13:50992400-50993400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr13:50992400-50993800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:50992400-50995000	Weak transcription	Hela-S3	cervix
25	chr13:50992400-50996200	Weak transcription	Fetal Thymus	thymus
26	chr13:50992400-50996600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links