Variant report

Variant	rs201778
Chromosome Location	chr13:51030128-51030129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51021960..51023934-chr13:51029269..51032075,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1262872	0.82[ASN][1000 genomes]
rs1410113	0.83[JPT][hapmap]
rs149846	0.87[CEU][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17074346	0.86[ASN][1000 genomes]
rs201763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201767	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201768	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201772	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs201777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201781	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201782	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201783	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201784	0.84[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201786	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201789	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs201807	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56023535	0.80[ASN][1000 genomes]
rs56075206	0.80[ASN][1000 genomes]
rs61962133	0.80[ASN][1000 genomes]
rs719103	0.81[CHB][hapmap]
rs7334326	0.81[ASN][1000 genomes]
rs9316495	0.92[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9562973	0.80[ASN][1000 genomes]
rs9568405	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs9568413	0.80[ASN][1000 genomes]
rs9568416	0.84[ASN][1000 genomes]
rs9568433	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51022600-51034200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51023200-51030200	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:51024600-51030200	Weak transcription	Aorta	Aorta
4	chr13:51025600-51032400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:51026200-51030200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:51026200-51030200	Weak transcription	Esophagus	oesophagus
7	chr13:51026200-51030400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:51026200-51031400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr13:51026200-51031400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr13:51026200-51033200	Weak transcription	Pancreas	Pancrea
11	chr13:51026400-51031600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr13:51026800-51031400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr13:51027800-51030200	Weak transcription	Fetal Muscle Leg	muscle
14	chr13:51027800-51030400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:51028000-51033200	Weak transcription	Right Ventricle	heart
16	chr13:51028200-51030200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:51028200-51030400	Weak transcription	NHDF-Ad	bronchial
18	chr13:51028600-51032000	Weak transcription	Fetal Heart	heart
19	chr13:51028800-51030200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr13:51028800-51030400	Weak transcription	Right Atrium	heart
21	chr13:51028800-51032800	Weak transcription	HSMMtube	muscle
22	chr13:51029000-51030400	Weak transcription	Psoas Muscle	Psoas
23	chr13:51029000-51033200	Weak transcription	Left Ventricle	heart
24	chr13:51029800-51030600	Enhancers	Adipose Nuclei	Adipose
25	chr13:51029800-51030600	Enhancers	Fetal Lung	lung
26	chr13:51029800-51030800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:51030000-51030400	Enhancers	Fetal Kidney	kidney
28	chr13:51030000-51030600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:51030000-51030800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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