Variant report

Variant	rs201777
Chromosome Location	chr13:51033040-51033041
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51028188..51030046-chr13:51031680..51034469,2	K562	blood:
2	chr13:50698404..50700652-chr13:51032560..51035012,2	MCF-7	breast:
3	chr13:51032344..51035128-chr13:51035167..51037188,2	K562	blood:

Variant related genes	Relation type
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1262872	0.84[ASN][1000 genomes]
rs1410113	0.83[JPT][hapmap]
rs149846	0.88[CEU][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17074346	0.88[ASN][1000 genomes]
rs201763	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201767	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201768	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201772	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201778	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201781	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201782	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201783	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201784	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201786	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201789	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201807	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56023535	0.82[ASN][1000 genomes]
rs56075206	0.82[ASN][1000 genomes]
rs61962133	0.82[ASN][1000 genomes]
rs719103	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs7334326	0.83[ASN][1000 genomes]
rs7983762	0.81[ASN][1000 genomes]
rs7996632	0.81[ASN][1000 genomes]
rs8000329	0.81[ASN][1000 genomes]
rs8000921	0.81[ASN][1000 genomes]
rs9316495	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9562968	0.81[ASN][1000 genomes]
rs9562970	0.81[ASN][1000 genomes]
rs9562972	0.81[ASN][1000 genomes]
rs9562973	0.82[ASN][1000 genomes]
rs9568405	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9568406	0.81[ASN][1000 genomes]
rs9568407	0.81[ASN][1000 genomes]
rs9568408	0.81[ASN][1000 genomes]
rs9568409	0.81[ASN][1000 genomes]
rs9568412	0.81[ASN][1000 genomes]
rs9568413	0.82[ASN][1000 genomes]
rs9568416	0.86[ASN][1000 genomes]
rs9568433	1.00[CHB][hapmap]
rs9634834	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51022600-51034200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51026200-51033200	Weak transcription	Pancreas	Pancrea
3	chr13:51028000-51033200	Weak transcription	Right Ventricle	heart
4	chr13:51029000-51033200	Weak transcription	Left Ventricle	heart
5	chr13:51030600-51050000	Weak transcription	Fetal Lung	lung
6	chr13:51030800-51040600	Weak transcription	Fetal Stomach	stomach
7	chr13:51031000-51033400	Weak transcription	Fetal Brain Male	brain
8	chr13:51031000-51033400	Weak transcription	Right Atrium	heart
9	chr13:51032000-51033200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr13:51032000-51033800	Weak transcription	NHDF-Ad	bronchial
11	chr13:51032000-51034800	Weak transcription	Primary B cells from cord blood	blood
12	chr13:51032000-51034800	Enhancers	Fetal Heart	heart
13	chr13:51032200-51033400	Enhancers	Fetal Kidney	kidney
14	chr13:51032200-51033800	Weak transcription	Psoas Muscle	Psoas
15	chr13:51032400-51033600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:51032800-51033600	Enhancers	HSMMtube	muscle
17	chr13:51033000-51033200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr13:51033000-51034200	Enhancers	K562	blood

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