Variant report

Variant	rs201819100
Chromosome Location	chr19:21687317-21687318
allele	-/AGAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr19:21687129-21689681	SK-N-SH	brain:	n/a	chr19:21688315-21688324 chr19:21688312-21688327 chr19:21688373-21688382

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:21687300-21687350	RPTEC	kidney:	n/a
2	chr19:21687300-21687350	SAEC	small airway:	n/a
3	chr19:21687300-21687350	MCF-7	breast:	n/a
4	chr19:21687300-21687350	CMK	blood:	n/a
5	chr19:21687300-21687350	Caco-2	colon:	n/a
6	chr19:21687300-21687350	GM12878	blood:	n/a
7	chr19:21687300-21687350	LNCaP	prostate:	n/a
8	chr19:21687300-21687350	NT2-D1	testis:	n/a
9	chr19:21687300-21687350	U87	brain:	n/a
10	chr19:21687300-21687350	AG04450	lung:	fetal
11	chr19:21687300-21687350	GM12892	blood:	n/a
12	chr19:21687300-21687350	IMR90	lung:	fetal
13	chr19:21687300-21687350	HepG2	liver:	n/a
14	chr19:21687300-21687350	ProgFib	skin:	n/a
15	chr19:21687300-21687350	HRCEpiC	kidney:	n/a
16	chr19:21687300-21687350	T-47D	breast:	n/a
17	chr19:21687300-21687350	AG04449	skin:	fetal
18	chr19:21687300-21687350	BE2_C	brain:	n/a
19	chr19:21687300-21687350	HCT-116	colon:	n/a
20	chr19:21687300-21687350	Hela-S3	cervix:	n/a
21	chr19:21687300-21687350	HL-60	blood:	n/a
22	chr19:21687300-21687350	NHDF-neo	bronchial:	n/a
23	chr19:21687300-21687350	K562	blood:	n/a
24	chr19:21687300-21687350	GM19239	blood:	n/a
25	chr19:21687300-21687350	HPAEpiC	pulmonary alveolar:	n/a
26	chr19:21687300-21687350	NH-A	brain:	n/a
27	chr19:21687300-21687350	ovcar-3	ovarian:	n/a
28	chr19:21687300-21687350	SK-N-SH_RA	brain:	n/a
29	chr19:21687300-21687350	MCF10A-Er-Src	breast:	n/a
30	chr19:21687300-21687350	PFSK-1	brain:	n/a
31	chr19:21687300-21687350	HRPEpiC	eye:	n/a
32	chr19:21687300-21687350	HUVEC	blood vessel:	n/a
33	chr19:21687300-21687350	Jurkat	blood:	n/a
34	chr19:21687300-21687350	AG10803	skin:	n/a
35	chr19:21687300-21687350	HCF	heart:	n/a
36	chr19:21687300-21687350	HEEpiC	esophagus:	n/a
37	chr19:21687300-21687350	AoSMC	blood vessel:	n/a
38	chr19:21687300-21687350	AG09309	skin:	n/a
39	chr19:21687300-21687350	GM12891	blood:	n/a
40	chr19:21687300-21687350	PANC-1	pancreas:	n/a
41	chr19:21687300-21687350	HAEpiC	amniotic membrane:	n/a
42	chr19:21687300-21687350	A549	lung:	n/a
43	chr19:21687300-21687350	H1-hESC	embryonic stem cell:	embryo
44	chr19:21687300-21687350	HIPEpiC	eye:	n/a
45	chr19:21687300-21687350	HCPEpiC	choroid plexus:	n/a
46	chr19:21687300-21687350	BJ	skin:	n/a
47	chr19:21687300-21687350	HEK293	kidney:	embryo
48	chr19:21687300-21687350	SKMC	muscle:	n/a
49	chr19:21687300-21687350	HNPCEpiC	eye:	n/a
50	chr19:21687300-21687350	HCM	heart:	n/a

No data

Variant related genes	Relation type
ZNF429	TF binding region
ZNF429	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv510759	chr19:21664791-21723191	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv543941	chr19:21676223-21693215	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv2762028	chr19:21685778-21755476	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv963024	chr19:21686690-21722618	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21658200-21687800	Weak transcription	Brain Substantia Nigra	brain
2	chr19:21666800-21687600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:21669000-21687600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr19:21673400-21687800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:21674800-21687800	Weak transcription	Brain Hippocampus Middle	brain
6	chr19:21676000-21688000	Weak transcription	Fetal Stomach	stomach
7	chr19:21678000-21688000	Weak transcription	Thymus	Thymus
8	chr19:21679200-21688200	Weak transcription	Brain Angular Gyrus	brain
9	chr19:21680000-21687800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:21680000-21688200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:21680200-21687600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:21680200-21688200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr19:21681200-21688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr19:21681400-21688200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr19:21681600-21688200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr19:21681800-21687600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr19:21681800-21688000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr19:21681800-21688000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr19:21681800-21688200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr19:21681800-21688400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:21683800-21688000	Weak transcription	Fetal Intestine Large	intestine
22	chr19:21686400-21687400	Active TSS	Liver	Liver
23	chr19:21686600-21687400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr19:21687200-21687400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr19:21687200-21687400	Enhancers	Pancreas	Pancrea
26	chr19:21687200-21687600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr19:21687200-21687800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr19:21687200-21688200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr19:21687200-21688200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr19:21687200-21688200	Enhancers	Primary T cells from cord blood	blood
31	chr19:21687200-21688200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links