Variant report

Variant	rs202108
Chromosome Location	chr13:30885943-30885944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr13:30885826-30886310	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:30885681..30887729-chr13:30893149..30895566,2	K562	blood:
2	chr13:30883453..30886159-chr13:30906856..30910683,3	K562	blood:
3	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:
4	chr13:30884908..30886563-chr13:30886759..30889976,3	MCF-7	breast:

Variant related genes	Relation type
KATNAL1	TF binding region
ENSG00000102781	Chromatin interaction
ENSG00000236463	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1275179	0.83[ASN][1000 genomes]
rs1275180	0.82[ASN][1000 genomes]
rs1291150	0.84[ASN][1000 genomes]
rs1621497	0.83[ASN][1000 genomes]
rs1754937	0.83[ASN][1000 genomes]
rs200507	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs200508	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs200509	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs202102	0.81[EUR][1000 genomes]
rs202103	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149852	0.82[ASN][1000 genomes]
rs2183284	0.82[ASN][1000 genomes]
rs595756	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs657160	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7997259	0.82[ASN][1000 genomes]
rs9578163	0.82[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882000-30889000	Weak transcription	Spleen	Spleen
2	chr13:30882200-30886000	Weak transcription	Esophagus	oesophagus
3	chr13:30882200-30886600	Weak transcription	HSMMtube	muscle
4	chr13:30882200-30887400	Weak transcription	Primary T cells from cord blood	blood
5	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
6	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
8	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:30882200-30896200	Weak transcription	Ovary	ovary
11	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr13:30882400-30886600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr13:30882400-30886600	Weak transcription	HSMM	muscle
14	chr13:30882400-30886800	Weak transcription	Liver	Liver
15	chr13:30882400-30887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr13:30882400-30887000	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:30882400-30887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:30882400-30887200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:30882400-30887400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:30882400-30887400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr13:30882400-30887400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr13:30882400-30887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
24	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
25	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
26	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
27	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr13:30882600-30886400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:30882600-30886400	Weak transcription	NHEK	skin
30	chr13:30882600-30887000	Weak transcription	Adipose Nuclei	Adipose
31	chr13:30882800-30886000	Weak transcription	HUVEC	blood vessel
32	chr13:30882800-30886600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr13:30882800-30886800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:30882800-30887000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:30883000-30886000	Weak transcription	Dnd41	blood
36	chr13:30883000-30886200	Weak transcription	Colon Smooth Muscle	Colon
37	chr13:30883000-30886400	Weak transcription	NHLF	lung
38	chr13:30883000-30886600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr13:30883000-30886600	Weak transcription	NH-A	brain
40	chr13:30883000-30887000	Weak transcription	Brain Angular Gyrus	brain
41	chr13:30883000-30887200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr13:30883000-30887200	Weak transcription	Brain Substantia Nigra	brain
43	chr13:30883000-30887400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr13:30883000-30889000	Weak transcription	Brain Anterior Caudate	brain
45	chr13:30883000-30889400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:30883000-30890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:30883200-30886400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr13:30883200-30886600	Weak transcription	NHDF-Ad	bronchial
49	chr13:30883200-30886800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr13:30883200-30886800	Weak transcription	Osteobl	bone

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