Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:30880917..30883470-chr13:30895639..30898288,2	K562	blood:
2	chr13:30897317..30899409-chr13:30902997..30905720,2	K562	blood:
3	chr13:30755392..30758007-chr13:30898113..30899995,2	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11616886	0.84[EUR][1000 genomes]
rs1275179	0.90[TSI][hapmap]
rs13378210	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1621497	0.82[CEU][hapmap]
rs200507	0.93[EUR][1000 genomes]
rs200508	0.92[EUR][1000 genomes]
rs200509	0.92[EUR][1000 genomes]
rs202103	0.98[EUR][1000 genomes]
rs202108	0.81[EUR][1000 genomes]
rs2077011	0.84[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs2149853	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2185008	0.83[MEX][hapmap]
rs2388536	0.83[ASN][1000 genomes]
rs595756	0.98[EUR][1000 genomes]
rs657160	0.98[EUR][1000 genomes]
rs756850	0.91[YRI][hapmap]
rs9285072	0.85[EUR][1000 genomes]
rs9508702	0.84[YRI][hapmap]
rs9550555	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9578161	0.83[EUR][1000 genomes]
rs9579556	0.85[EUR][1000 genomes]
rs9579558	0.84[CEU][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs202102	KATNAL1	cis	cerebellum	SCAN
rs202102	PDX1	cis	cerebellum	SCAN
rs202102	N4BP2L1	cis	parietal	SCAN
rs202102	RASL11A	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
3	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30886000-30898400	Weak transcription	Lung	lung
5	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
7	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
8	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
10	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
12	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
15	chr13:30896000-30899600	Weak transcription	Fetal Heart	heart
16	chr13:30897200-30905600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:30898200-30903400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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