Variant report

Variant	rs2077011
Chromosome Location	chr13:30884562-30884563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30883453..30886159-chr13:30906856..30910683,3	K562	blood:
2	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11616886	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275179	0.87[CEU][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs1275180	0.80[EUR][1000 genomes]
rs1291150	0.80[EUR][1000 genomes]
rs13378210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1621497	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs1754937	0.84[CEU][hapmap]
rs17589894	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs200507	0.82[EUR][1000 genomes]
rs200508	0.81[EUR][1000 genomes]
rs200509	0.81[EUR][1000 genomes]
rs202102	0.84[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs202103	0.86[EUR][1000 genomes]
rs2149852	0.80[EUR][1000 genomes]
rs55825913	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs595756	0.86[EUR][1000 genomes]
rs657160	0.86[EUR][1000 genomes]
rs9285072	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9550555	0.98[EUR][1000 genomes]
rs9578161	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9578163	0.80[EUR][1000 genomes]
rs9579556	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9579558	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2077011	N4BP2L1	cis	parietal	SCAN
rs2077011	FRY	cis	cerebellum	SCAN
rs2077011	RASL11A	cis	parietal	SCAN

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882000-30885200	Weak transcription	Gastric	stomach
2	chr13:30882000-30889000	Weak transcription	Spleen	Spleen
3	chr13:30882200-30885800	Weak transcription	Lung	lung
4	chr13:30882200-30885800	Weak transcription	Thymus	Thymus
5	chr13:30882200-30886000	Weak transcription	Esophagus	oesophagus
6	chr13:30882200-30886600	Weak transcription	HSMMtube	muscle
7	chr13:30882200-30887400	Weak transcription	Primary T cells from cord blood	blood
8	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
9	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
11	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr13:30882200-30896200	Weak transcription	Ovary	ovary
14	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr13:30882400-30885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:30882400-30885400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:30882400-30885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:30882400-30885800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:30882400-30885800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:30882400-30885800	Weak transcription	Fetal Lung	lung
21	chr13:30882400-30886600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr13:30882400-30886600	Weak transcription	HSMM	muscle
23	chr13:30882400-30886800	Weak transcription	Liver	Liver
24	chr13:30882400-30887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr13:30882400-30887000	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:30882400-30887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr13:30882400-30887200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:30882400-30887400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:30882400-30887400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr13:30882400-30887400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr13:30882400-30887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
34	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
35	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
36	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr13:30882600-30886400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:30882600-30886400	Weak transcription	NHEK	skin
39	chr13:30882600-30887000	Weak transcription	Adipose Nuclei	Adipose
40	chr13:30882800-30886000	Weak transcription	HUVEC	blood vessel
41	chr13:30882800-30886600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:30882800-30886800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:30882800-30887000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr13:30883000-30885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:30883000-30885600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:30883000-30885800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr13:30883000-30885800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr13:30883000-30885800	Weak transcription	Fetal Thymus	thymus
49	chr13:30883000-30885800	Weak transcription	HMEC	breast
50	chr13:30883000-30885800	Weak transcription	Monocytes-CD14+_RO01746	blood

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