Variant report

Variant	rs55825913
Chromosome Location	chr13:30918302-30918303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30912562..30914754-chr13:30916773..30919801,3	K562	blood:
2	chr13:30916446..30918652-chr13:31030492..31033146,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11616886	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1275179	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1275180	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1291150	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378210	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1621497	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17589894	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs200507	0.82[AMR][1000 genomes]
rs200508	0.80[AMR][1000 genomes]
rs200509	0.82[AMR][1000 genomes]
rs202103	0.82[AMR][1000 genomes]
rs2077011	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2149852	0.92[EUR][1000 genomes]
rs2183284	0.80[EUR][1000 genomes]
rs657160	0.82[AMR][1000 genomes]
rs7997259	0.91[EUR][1000 genomes]
rs9285072	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9550555	0.84[EUR][1000 genomes]
rs9578161	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9578163	0.92[EUR][1000 genomes]
rs9579556	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9579558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv455853	chr13:30911531-30951514	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv561394	chr13:30911531-30951514	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30909000-30919800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr13:30909800-30919000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:30909800-30919400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:30910000-30919000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:30910000-30920600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:30910800-30919200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:30911000-30919000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr13:30911200-30919600	Weak transcription	Primary B cells from cord blood	blood
9	chr13:30912000-30918400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:30913800-30918600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr13:30913800-30919200	Weak transcription	Spleen	Spleen
12	chr13:30914800-30918400	Weak transcription	Lung	lung
13	chr13:30915400-30920000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:30915400-30920200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:30915400-30920600	Weak transcription	Right Atrium	heart
16	chr13:30915400-30921600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr13:30915800-30919200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr13:30916400-30919600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:30916600-30920600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr13:30916800-30919200	Weak transcription	Fetal Thymus	thymus
21	chr13:30916800-30919200	Weak transcription	Thymus	Thymus
22	chr13:30916800-30919600	Weak transcription	Esophagus	oesophagus
23	chr13:30917000-30926800	Weak transcription	Aorta	Aorta
24	chr13:30917200-30920200	Weak transcription	HMEC	breast
25	chr13:30917200-30920400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr13:30917200-30920600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:30917200-30920600	Weak transcription	NHEK	skin
28	chr13:30917400-30920400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr13:30917600-30920200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr13:30917600-30920400	Weak transcription	Colon Smooth Muscle	Colon
31	chr13:30917800-30919000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr13:30917800-30919000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr13:30917800-30919200	Weak transcription	Primary T cells from cord blood	blood
34	chr13:30917800-30919200	Weak transcription	Dnd41	blood
35	chr13:30917800-30920400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr13:30918000-30919000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr13:30918000-30920400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr13:30918200-30918600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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