Variant report

Variant	rs11616886
Chromosome Location	chr13:30894402-30894403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1275179	0.80[EUR][1000 genomes]
rs13378210	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17589894	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs200507	0.81[EUR][1000 genomes]
rs200508	0.81[EUR][1000 genomes]
rs200509	0.81[EUR][1000 genomes]
rs202102	0.84[EUR][1000 genomes]
rs202103	0.86[EUR][1000 genomes]
rs2077011	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825913	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs595756	0.86[EUR][1000 genomes]
rs657160	0.86[EUR][1000 genomes]
rs9285072	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9550555	0.98[EUR][1000 genomes]
rs9578161	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9579556	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9579558	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:30882200-30896200	Weak transcription	Ovary	ovary
3	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
6	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
8	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
9	chr13:30886000-30898400	Weak transcription	Lung	lung
10	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
13	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
14	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
16	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:30892000-30894800	Enhancers	Brain Anterior Caudate	brain
19	chr13:30892000-30895200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr13:30892000-30895800	Enhancers	Brain Cingulate Gyrus	brain
21	chr13:30892200-30895000	Enhancers	Brain Substantia Nigra	brain
22	chr13:30892200-30895200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:30892400-30894800	Enhancers	Colon Smooth Muscle	Colon
24	chr13:30892400-30896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:30892800-30896800	Weak transcription	Left Ventricle	heart
26	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
27	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
28	chr13:30893400-30895200	Enhancers	Brain Angular Gyrus	brain
29	chr13:30894000-30894800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:30894200-30894600	Enhancers	Brain Hippocampus Middle	brain
31	chr13:30894200-30894600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr13:30894200-30896800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:30894200-30897400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr13:30894200-30897400	Weak transcription	NHLF	lung
35	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
36	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr13:30894400-30895000	Weak transcription	HSMMtube	muscle
39	chr13:30894400-30896000	Enhancers	Fetal Intestine Large	intestine

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