Variant report

Variant	rs9578161
Chromosome Location	chr13:30879483-30879484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11616886	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13378210	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17589894	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs202102	0.83[EUR][1000 genomes]
rs202103	0.85[EUR][1000 genomes]
rs2077011	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55825913	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs595756	0.85[EUR][1000 genomes]
rs657160	0.85[EUR][1000 genomes]
rs9285072	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9550555	0.96[EUR][1000 genomes]
rs9579556	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9579558	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30843000-30880200	Weak transcription	Fetal Stomach	stomach
2	chr13:30859800-30879600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:30864400-30879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
7	chr13:30870800-30880400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:30871000-30880400	Weak transcription	Fetal Intestine Small	intestine
9	chr13:30871000-30880400	Weak transcription	Right Ventricle	heart
10	chr13:30873800-30879600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:30876000-30880600	Enhancers	Fetal Brain Male	brain
12	chr13:30876200-30880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:30876200-30880600	Weak transcription	Ovary	ovary
14	chr13:30876400-30879600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:30876400-30879600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:30876400-30879600	Weak transcription	Psoas Muscle	Psoas
17	chr13:30876400-30880800	Weak transcription	Lung	lung
18	chr13:30876600-30880600	Enhancers	Fetal Heart	heart
19	chr13:30876800-30880200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr13:30877000-30880600	Enhancers	Primary B cells from cord blood	blood
21	chr13:30877200-30880400	Enhancers	HepG2	liver
22	chr13:30877200-30880600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr13:30877400-30879600	Enhancers	Adipose Nuclei	Adipose
24	chr13:30877400-30879600	Enhancers	Fetal Thymus	thymus
25	chr13:30877400-30879800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:30877400-30879800	Weak transcription	Brain Angular Gyrus	brain
27	chr13:30877400-30880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr13:30877400-30880600	Enhancers	Primary B cells from peripheral blood	blood
29	chr13:30877800-30880400	Flanking Active TSS	Dnd41	blood
30	chr13:30877800-30880800	Weak transcription	Spleen	Spleen
31	chr13:30878000-30880200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr13:30878000-30880200	Enhancers	K562	blood
33	chr13:30878000-30880600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr13:30878000-30880600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr13:30878200-30879600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:30878200-30879600	Enhancers	Fetal Brain Female	brain
37	chr13:30878200-30879600	Weak transcription	A549	lung
38	chr13:30878200-30879600	Weak transcription	Osteobl	bone
39	chr13:30878200-30879800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr13:30878200-30879800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr13:30878200-30880000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr13:30878200-30880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr13:30878200-30880600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr13:30878400-30880600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr13:30878800-30879600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr13:30878800-30879800	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr13:30878800-30880400	Enhancers	Brain Anterior Caudate	brain
48	chr13:30878800-30880600	Weak transcription	Brain Hippocampus Middle	brain
49	chr13:30878800-30880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:30879000-30879600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links