Variant report

Variant	rs9508702
Chromosome Location	chr13:30889907-30889908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30889520..30891949-chr13:30901907..30903845,2	K562	blood:
2	chr13:30888078..30890627-chr13:31190542..31192551,3	MCF-7	breast:
3	chr13:30874478..30877228-chr13:30887238..30890172,2	K562	blood:
4	chr13:30884908..30886563-chr13:30886759..30889976,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189403	Chromatin interaction
ENSG00000132952	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12873373	0.83[EUR][1000 genomes]
rs202102	0.84[YRI][hapmap]
rs4769824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6490453	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7335432	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs756850	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763808	0.96[EUR][1000 genomes]
rs7991052	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9506288	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs9506290	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs9506291	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9506292	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508701	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs9508703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508705	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508706	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508711	0.85[EUR][1000 genomes]
rs9551887	0.93[EUR][1000 genomes]
rs9634361	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
2	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr13:30882200-30896200	Weak transcription	Ovary	ovary
5	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
8	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
9	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
10	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr13:30883000-30890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
13	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
14	chr13:30886000-30898400	Weak transcription	Lung	lung
15	chr13:30886200-30892000	Weak transcription	Dnd41	blood
16	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:30887600-30890400	Weak transcription	Liver	Liver
19	chr13:30887600-30890400	Weak transcription	Brain Substantia Nigra	brain
20	chr13:30887600-30892600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:30887600-30893200	Weak transcription	NHDF-Ad	bronchial
22	chr13:30887600-30893400	Weak transcription	Brain Angular Gyrus	brain
23	chr13:30887800-30891400	Weak transcription	Fetal Stomach	stomach
24	chr13:30887800-30892000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:30887800-30892000	Weak transcription	Adipose Nuclei	Adipose
26	chr13:30887800-30892000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr13:30887800-30892400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:30888000-30890400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:30888000-30890600	Weak transcription	Colon Smooth Muscle	Colon
30	chr13:30888000-30892000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:30888000-30892000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr13:30888000-30894000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
34	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
35	chr13:30888200-30890400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr13:30888200-30892000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr13:30888200-30892200	Weak transcription	Osteobl	bone
38	chr13:30888200-30893800	Weak transcription	HSMMtube	muscle
39	chr13:30888600-30892000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:30888800-30892000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:30889000-30892000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr13:30889000-30893800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr13:30889200-30890400	Weak transcription	Primary T cells from cord blood	blood
44	chr13:30889200-30893400	Weak transcription	NHLF	lung
45	chr13:30889400-30890400	Weak transcription	Brain Anterior Caudate	brain
46	chr13:30889400-30891000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
49	chr13:30889600-30890200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr13:30889600-30890200	Weak transcription	Brain Hippocampus Middle	brain

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