Variant report

Variant	rs9508703
Chromosome Location	chr13:30895193-30895194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12873373	0.83[EUR][1000 genomes]
rs4769824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6490453	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7335432	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756850	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763808	0.96[EUR][1000 genomes]
rs7991052	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506288	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs9506290	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs9506291	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9506292	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508701	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs9508702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508705	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508706	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508711	0.85[EUR][1000 genomes]
rs9551887	0.93[EUR][1000 genomes]
rs9634361	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9508703	FLT3	cis	parietal	SCAN
rs9508703	POLR1D	cis	parietal	SCAN
rs9508703	KATNAL1	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:30882200-30896200	Weak transcription	Ovary	ovary
3	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
5	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
7	chr13:30886000-30898400	Weak transcription	Lung	lung
8	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
11	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
12	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
14	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr13:30892000-30895200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr13:30892000-30895800	Enhancers	Brain Cingulate Gyrus	brain
18	chr13:30892200-30895200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:30892400-30896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:30892800-30896800	Weak transcription	Left Ventricle	heart
21	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
22	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
23	chr13:30893400-30895200	Enhancers	Brain Angular Gyrus	brain
24	chr13:30894200-30896800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:30894200-30897400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:30894200-30897400	Weak transcription	NHLF	lung
27	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
28	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr13:30894400-30896000	Enhancers	Fetal Intestine Large	intestine
31	chr13:30894600-30897600	Weak transcription	Brain Hippocampus Middle	brain
32	chr13:30894800-30896000	Enhancers	Fetal Intestine Small	intestine
33	chr13:30894800-30896800	Weak transcription	Aorta	Aorta
34	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
35	chr13:30895000-30895200	Enhancers	HSMMtube	muscle

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