Variant report

Variant	rs9508701
Chromosome Location	chr13:30887663-30887664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30885681..30887729-chr13:30893149..30895566,2	K562	blood:
2	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:
3	chr13:30874478..30877228-chr13:30887238..30890172,2	K562	blood:
4	chr13:30884908..30886563-chr13:30886759..30889976,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236463	Chromatin interaction
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12873373	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952607	1.00[YRI][hapmap]
rs35962246	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4769824	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs6490453	0.96[EUR][1000 genomes]
rs7335432	0.88[EUR][1000 genomes]
rs756850	0.84[CEU][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs763808	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7991052	0.93[EUR][1000 genomes]
rs9506288	0.93[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9506290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506291	0.88[EUR][1000 genomes]
rs9506292	0.88[EUR][1000 genomes]
rs9508700	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs9508702	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs9508703	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs9508705	0.88[EUR][1000 genomes]
rs9508706	0.88[EUR][1000 genomes]
rs9508711	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9551887	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634361	0.93[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9508701	FLT3	cis	parietal	SCAN
rs9508701	POLR1D	cis	parietal	SCAN
rs9508701	KATNAL1	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882000-30889000	Weak transcription	Spleen	Spleen
2	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
3	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
5	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:30882200-30896200	Weak transcription	Ovary	ovary
8	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
11	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
12	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
13	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:30883000-30889000	Weak transcription	Brain Anterior Caudate	brain
15	chr13:30883000-30889400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:30883000-30890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:30883200-30888000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:30884000-30888000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
20	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
21	chr13:30885600-30888200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr13:30885800-30887800	Enhancers	Fetal Lung	lung
23	chr13:30885800-30888000	Enhancers	Thymus	Thymus
24	chr13:30885800-30889000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr13:30885800-30889800	Enhancers	Primary B cells from peripheral blood	blood
26	chr13:30885800-30889800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr13:30886000-30888000	Enhancers	HUVEC	blood vessel
28	chr13:30886000-30888400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:30886000-30898400	Weak transcription	Lung	lung
30	chr13:30886200-30888000	Enhancers	Colon Smooth Muscle	Colon
31	chr13:30886200-30889200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr13:30886200-30892000	Weak transcription	Dnd41	blood
33	chr13:30886400-30887800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:30886400-30887800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:30886400-30887800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:30886400-30888800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr13:30886400-30889200	Enhancers	NHLF	lung
38	chr13:30886600-30887800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr13:30886600-30888000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr13:30886600-30888000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr13:30886600-30888000	Enhancers	NH-A	brain
42	chr13:30886600-30888200	Enhancers	Rectal Smooth Muscle	rectum
43	chr13:30886600-30888200	Enhancers	HSMM	muscle
44	chr13:30886600-30888200	Enhancers	HSMMtube	muscle
45	chr13:30886800-30888000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr13:30886800-30888000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr13:30886800-30888200	Enhancers	Osteobl	bone
48	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr13:30887000-30887800	Enhancers	Adipose Nuclei	Adipose

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