Variant report

Variant	rs9506292
Chromosome Location	chr13:30906258-30906259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30905394..30908859-chr13:30911466..30914534,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12873373	0.84[EUR][1000 genomes]
rs202102	0.90[YRI][hapmap]
rs4769824	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6490453	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7335432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756850	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763808	0.86[EUR][1000 genomes]
rs7991052	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506288	0.88[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs9506290	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs9506291	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508700	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508701	0.88[CEU][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs9508702	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508703	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508705	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508706	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508711	0.95[EUR][1000 genomes]
rs9551887	0.94[EUR][1000 genomes]
rs9634361	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9506292	KATNAL1	cis	cerebellum	SCAN
rs9506292	POLR1D	cis	parietal	SCAN
rs9506292	FLT3	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
3	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
4	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
5	chr13:30903600-30914000	Weak transcription	Aorta	Aorta
6	chr13:30903800-30906600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:30903800-30912000	Weak transcription	NHDF-Ad	bronchial
8	chr13:30904400-30909400	Weak transcription	Fetal Thymus	thymus
9	chr13:30904600-30907000	Enhancers	Rectal Smooth Muscle	rectum
10	chr13:30904800-30906400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr13:30905200-30907000	Enhancers	Dnd41	blood
12	chr13:30905200-30907800	Enhancers	Colon Smooth Muscle	Colon
13	chr13:30905400-30906400	Enhancers	Brain Hippocampus Middle	brain
14	chr13:30905400-30906400	Enhancers	Brain Substantia Nigra	brain
15	chr13:30905400-30906600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:30905400-30906600	Enhancers	Adipose Nuclei	Adipose
17	chr13:30905400-30906600	Enhancers	Brain Anterior Caudate	brain
18	chr13:30905400-30906600	Enhancers	Ovary	ovary
19	chr13:30905400-30906600	Enhancers	Right Ventricle	heart
20	chr13:30905400-30907000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr13:30905400-30907200	Enhancers	Fetal Heart	heart
22	chr13:30905400-30908200	Enhancers	Fetal Intestine Small	intestine
23	chr13:30905600-30906800	Enhancers	Hela-S3	cervix
24	chr13:30905600-30908400	Enhancers	Primary B cells from peripheral blood	blood
25	chr13:30905800-30909000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:30905800-30909000	Weak transcription	Brain Angular Gyrus	brain
27	chr13:30905800-30909200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr13:30905800-30913600	Weak transcription	Fetal Stomach	stomach
29	chr13:30905800-30913600	Weak transcription	Right Atrium	heart
30	chr13:30905800-30913600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr13:30905800-30914000	Weak transcription	Fetal Lung	lung
32	chr13:30905800-30914000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr13:30906000-30907000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:30906000-30909200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:30906200-30907000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:30906200-30907000	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr13:30906200-30908200	Enhancers	Fetal Intestine Large	intestine

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