Variant report
| Variant | rs2021938 |
|---|---|
| Chromosome Location | chrX:104624870-104624871 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:104615663..104618237-chrX:104623681..104625989,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1321389 | 1.00[YRI][hapmap] |
| rs1321390 | 1.00[YRI][hapmap] |
| rs1358795 | 0.95[YRI][hapmap] |
| rs1406993 | 1.00[YRI][hapmap] |
| rs16984714 | 1.00[YRI][hapmap] |
| rs16984717 | 1.00[YRI][hapmap] |
| rs16984733 | 1.00[YRI][hapmap] |
| rs17003893 | 1.00[YRI][hapmap] |
| rs2392752 | 0.95[YRI][hapmap] |
| rs6523838 | 1.00[YRI][hapmap] |
| rs6523841 | 1.00[YRI][hapmap] |
| rs6621963 | 1.00[YRI][hapmap] |
| rs6652921 | 1.00[YRI][hapmap] |
| rs7052978 | 1.00[YRI][hapmap] |
| rs7053099 | 1.00[YRI][hapmap] |
| rs7054903 | 0.91[YRI][hapmap] |
| rs7059947 | 0.95[YRI][hapmap] |
| rs7063939 | 1.00[YRI][hapmap] |
| rs7067174 | 1.00[YRI][hapmap] |
| rs7885408 | 0.95[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432352 | chrX:104346855-104831855 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
