Variant report

Variant	rs6523841
Chromosome Location	chrX:104618754-104618755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1321389	1.00[YRI][hapmap]
rs1321390	1.00[YRI][hapmap]
rs1358795	0.95[YRI][hapmap]
rs1406993	1.00[YRI][hapmap]
rs16984714	1.00[YRI][hapmap]
rs16984717	1.00[YRI][hapmap]
rs16984733	1.00[YRI][hapmap]
rs17003893	1.00[YRI][hapmap]
rs2021938	1.00[YRI][hapmap]
rs2392752	0.95[YRI][hapmap]
rs6523838	1.00[YRI][hapmap]
rs6621963	1.00[YRI][hapmap]
rs6652921	1.00[YRI][hapmap]
rs7052978	1.00[YRI][hapmap]
rs7053099	1.00[YRI][hapmap]
rs7054903	0.91[YRI][hapmap]
rs7059947	0.95[YRI][hapmap]
rs7063939	1.00[YRI][hapmap]
rs7067174	1.00[YRI][hapmap]
rs7885408	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104607000-104620600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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