Variant report

Variant	rs2024248
Chromosome Location	chr7:121469907-121469908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10452995	1.00[CEU][hapmap]
rs1206491	1.00[CEU][hapmap]
rs17143870	1.00[CEU][hapmap]
rs17143872	1.00[CEU][hapmap]
rs17143879	1.00[CEU][hapmap]
rs17143901	1.00[CEU][hapmap]
rs1916882	1.00[CEU][hapmap]
rs58096965	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9918557	1.00[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121468800-121471200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:121469000-121470000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121469800-121471800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links