Variant report
| Variant | rs58096965 |
|---|---|
| Chromosome Location | chr7:121482680-121482681 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AASS-1 | chr7:121482422-121483274 | NONHSAT123014 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10452995 | 1.00[EUR][1000 genomes] |
| rs10488056 | 1.00[EUR][1000 genomes] |
| rs1206491 | 0.84[EUR][1000 genomes] |
| rs17143870 | 1.00[EUR][1000 genomes] |
| rs17143872 | 1.00[EUR][1000 genomes] |
| rs17143879 | 0.89[EUR][1000 genomes] |
| rs17143901 | 1.00[EUR][1000 genomes] |
| rs1916881 | 1.00[EUR][1000 genomes] |
| rs1916882 | 1.00[EUR][1000 genomes] |
| rs2024248 | 0.80[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs2402592 | 1.00[EUR][1000 genomes] |
| rs57309972 | 1.00[EUR][1000 genomes] |
| rs58082429 | 1.00[EUR][1000 genomes] |
| rs58853157 | 1.00[EUR][1000 genomes] |
| rs59694519 | 1.00[EUR][1000 genomes] |
| rs60930011 | 1.00[EUR][1000 genomes] |
| rs73434977 | 1.00[EUR][1000 genomes] |
| rs73434983 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73434988 | 1.00[EUR][1000 genomes] |
| rs73434990 | 1.00[EUR][1000 genomes] |
| rs73434994 | 1.00[EUR][1000 genomes] |
| rs73434996 | 1.00[EUR][1000 genomes] |
| rs73435002 | 1.00[EUR][1000 genomes] |
| rs73437103 | 1.00[EUR][1000 genomes] |
| rs73437114 | 1.00[EUR][1000 genomes] |
| rs73437125 | 1.00[EUR][1000 genomes] |
| rs73437144 | 1.00[EUR][1000 genomes] |
| rs73437150 | 1.00[EUR][1000 genomes] |
| rs960540 | 1.00[EUR][1000 genomes] |
| rs9918557 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429808 | chr7:121384049-121600049 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
