Variant report

Variant	rs73434996
Chromosome Location	chr7:121514326-121514327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10452995	1.00[EUR][1000 genomes]
rs10488056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1206491	0.84[EUR][1000 genomes]
rs17143870	1.00[EUR][1000 genomes]
rs17143872	1.00[EUR][1000 genomes]
rs17143879	0.89[EUR][1000 genomes]
rs17143901	1.00[EUR][1000 genomes]
rs1916881	1.00[EUR][1000 genomes]
rs1916882	1.00[EUR][1000 genomes]
rs2402592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57309972	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58082429	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58096965	1.00[EUR][1000 genomes]
rs58853157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59694519	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60930011	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434977	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434983	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434988	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434990	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73435002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437103	1.00[EUR][1000 genomes]
rs73437114	1.00[EUR][1000 genomes]
rs73437125	1.00[EUR][1000 genomes]
rs73437144	1.00[EUR][1000 genomes]
rs73437150	1.00[EUR][1000 genomes]
rs960540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1802911	chr7:121489994-121524500	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121512200-121515600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:121512400-121514400	Bivalent/Poised TSS	Fetal Lung	lung
3	chr7:121512400-121514600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr7:121512400-121515000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:121512400-121515000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr7:121512400-121515200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
7	chr7:121512400-121515200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
8	chr7:121512400-121516000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
9	chr7:121512600-121514400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:121512600-121514400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
11	chr7:121512600-121514800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
12	chr7:121512600-121515000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:121512600-121515200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr7:121512600-121515200	Active TSS	NHEK	skin
15	chr7:121512600-121515400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:121512600-121515600	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr7:121512600-121515600	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr7:121512600-121516000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr7:121512600-121516000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:121512600-121516800	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr7:121512800-121514400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:121512800-121514400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
23	chr7:121512800-121514400	Bivalent/Poised TSS	Fetal Kidney	kidney
24	chr7:121512800-121514400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr7:121512800-121514400	Active TSS	Rectal Smooth Muscle	rectum
26	chr7:121512800-121514400	Bivalent/Poised TSS	Thymus	Thymus
27	chr7:121512800-121514400	Active TSS	HMEC	breast
28	chr7:121512800-121514400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
29	chr7:121512800-121514800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:121512800-121514800	Active TSS	Aorta	Aorta
31	chr7:121512800-121514800	Active TSS	Ovary	ovary
32	chr7:121512800-121515000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:121512800-121515000	Active TSS	Right Atrium	heart
34	chr7:121512800-121515200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:121512800-121515600	Active TSS	H1 Cell Line	embryonic stem cell
36	chr7:121512800-121515600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:121512800-121515800	Active TSS	Fetal Brain Male	brain
38	chr7:121512800-121516200	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr7:121512800-121516800	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr7:121512800-121517000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr7:121512800-121518600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:121513000-121514400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:121513000-121514400	Flanking Active TSS	Liver	Liver
44	chr7:121513000-121514400	Bivalent/Poised TSS	Left Ventricle	heart
45	chr7:121513200-121514400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:121513400-121514800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
47	chr7:121513800-121514400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:121513800-121514400	Active TSS	Psoas Muscle	Psoas
49	chr7:121513800-121514400	Bivalent/Poised TSS	NHLF	lung
50	chr7:121513800-121514600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links